Detailed information of deep learning profile BP000333.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in vagina using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000333.1
Cell line/tissue: vagina
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR655ECZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.12 0.05 0.03 0.12 0.08 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3350 2903 2710 4483 6011 4094 2824 3669 2766 3132 4051 4237 4419 4509 3827 2048 3206 4591 1509 317 11963 762 2513 14405 184 6692 685 218 390 1962 6801 1464 2081 6209 2767 5279 3497 3953 3914 3193 4238 5914 3172 4144 4501 5279 4374 3944 4302 4210 ]
C [ 4282 2777 4365 5661 3433 3058 2416 4042 7403 6328 5599 5131 4555 3574 3985 5347 3265 1657 13262 16168 595 10310 7201 546 94 157 593 73 490 13032 604 8674 6044 4222 3538 3198 2814 4996 6233 7600 6024 2980 4995 4018 4022 3629 3827 4139 4330 4511 ]
G [ 4348 6267 6228 2828 4224 4053 3675 3848 2411 2889 3585 3816 3710 3350 4435 2219 6567 7691 989 149 2621 5262 1231 1080 16350 9750 9189 16251 14610 465 8751 5320 1818 4883 4722 3526 7576 4655 3542 1971 2178 4788 4593 4700 4110 3555 3711 5068 4650 4488 ]
T [ 4755 4788 3432 3763 3067 5530 7820 5176 4155 4386 3500 3551 4051 5302 4488 7121 3697 2796 975 101 1556 401 5790 704 107 136 6268 193 1245 1276 579 1277 6792 1421 5708 4732 2848 3131 3046 3971 4295 3053 3975 3873 4102 4272 4823 3584 3453 3526 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.04 0.04 -0.05 -0.03 -0.03 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.02 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.04 0.03 -0.01 0.08 0.12 -0.02 0.08 0.04 0.00 -0.01 -0.04 0.02 -0.03 -0.02 0.09 -0.02 0.04 0.02 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.01 0.06 0.04 -0.01 0.01 0.12 0.09 0.06 0.12 0.09 -0.02 0.09 0.03 -0.00 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.05 -0.03 -0.04 0.03 -0.04 -0.03 -0.07 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 467

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 78

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 68

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages