Detailed information of deep learning profile BP000336.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000336.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR666JEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4394 4381 4556 5650 5351 5052 4822 4922 3966 5252 4975 3883 4060 3625 6038 7134 1983 8405 1838 832 1601 1602 226 7335 138 133 1018 7826 594 2152 182 1318 3495 4720 8273 5441 6335 5101 4566 4446 5298 5121 6177 8959 6543 4028 4779 4429 5682 5807 ]
C [ 5116 5171 5510 4217 4119 4730 5198 5196 5278 2667 2494 4438 5135 8440 3947 5156 5460 1957 6083 9502 619 16937 19081 10874 11232 19217 1447 1375 6319 2890 183 1209 8617 7013 2768 5044 3931 4279 4424 4144 3427 3007 4345 4211 4634 4587 3337 6749 6842 4923 ]
G [ 5056 4942 4698 4391 4116 4429 4632 5467 3651 6586 8126 6667 5536 3266 3591 3872 4753 6751 9905 867 14820 641 90 628 124 75 527 7351 11704 776 18791 15235 1914 3847 5982 4505 4045 4975 5574 6205 6835 8063 4593 2887 3538 3921 6137 4896 3327 4622 ]
T [ 5129 5201 4931 5437 6109 5484 5043 4110 6800 5190 4100 4707 4964 4364 6119 3533 7499 2582 1869 8494 2655 515 298 858 8201 270 16703 3143 1078 13877 539 1933 5669 4115 2672 4705 5384 5340 5131 4900 4135 3504 4580 3638 4980 7159 5442 3621 3844 4343 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.03 -0.07 -0.03 -0.03 0.06 -0.04 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.00 0.04 0.12 -0.02 0.12 0.15 0.09 0.12 0.15 0.03 -0.00 0.05 0.09 -0.01 -0.01 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.12 -0.02 -0.03 0.02 -0.06 -0.01 0.01 0.05 0.11 -0.02 0.16 0.10 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.04 -0.04 -0.06 0.06 -0.03 0.08 -0.02 -0.03 0.03 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1038

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 52

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages