Detailed information of deep learning profile BP000335.1

  1. Home
  2. Deep Learning Profile > BP000335.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000335.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR661XNQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.12 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.05 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.03 0.10 0.06 0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4344 3829 3545 5298 6978 4887 3647 4536 3562 4021 4612 5075 4962 5130 4428 2737 4237 5339 1807 427 12446 1081 3009 15949 269 6837 1599 635 1092 3474 7252 2448 3194 6617 3701 5616 4209 4858 4642 4253 4942 6043 4165 4861 5052 5404 5162 4896 4975 5049 ]
C [ 4910 3683 5197 6491 4347 4071 3450 5007 8629 7212 6488 5567 5259 4753 5342 6977 4417 2309 15841 19283 995 11719 7955 747 142 382 1500 659 1914 12831 2110 9064 6377 4855 4248 4039 3931 5447 6360 7264 6247 4392 5570 4873 4897 4687 4802 4955 5322 5181 ]
G [ 5163 6882 6889 3727 4764 4813 4412 4571 3047 3622 4487 4760 4623 4082 5072 3068 6870 8748 1241 140 3774 6636 1670 2082 19452 12463 10879 18098 15194 1608 9079 6085 3017 5965 5522 4791 8078 5627 5038 3540 3801 5436 5405 5582 5182 4774 4752 5602 5438 5360 ]
T [ 5576 5599 4362 4477 3904 6222 8484 5879 4755 5138 4406 4591 5149 6028 5151 7211 4469 3597 1104 143 2778 557 7359 1215 130 311 6015 601 1793 2080 1552 2396 7405 2556 6522 5547 3775 4061 3953 4936 5003 4122 4853 4677 4862 5128 5277 4540 4258 4403 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.03 -0.02 -0.01 0.06 -0.03 0.03 -0.03 -0.03 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.08 0.13 -0.02 0.08 0.04 -0.00 -0.01 -0.05 0.00 -0.02 -0.02 0.07 -0.01 0.03 0.02 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.12 0.09 0.06 0.11 0.07 -0.02 0.07 0.03 -0.00 0.02 0.01 0.00 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.04 -0.03 -0.03 -0.05 0.01 -0.03 0.00 -0.01 -0.03 -0.01 0.02 -0.02 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 859

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 442

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 52

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages