Detailed information of deep learning profile BP000331.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000331.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR619WGF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4844 4323 4238 5747 7061 5284 4177 4900 4152 4578 5183 5331 5448 5518 4792 3222 4837 5898 2205 702 13644 1678 3464 16866 351 7482 1681 503 891 3712 8030 2397 3352 7162 3795 5971 4777 5397 4864 4771 5510 6422 4628 5473 5660 5892 5581 5519 5528 5585 ]
C [ 5007 4107 5539 6340 4612 4428 3903 5217 8124 7193 6275 5799 5449 5049 5632 6992 4773 2621 15947 20146 1315 11301 7744 621 77 192 943 280 1473 14150 1673 10217 6625 5051 4549 4277 4067 5537 6654 7436 6383 4621 5695 5043 4961 4917 5050 5154 5369 5292 ]
G [ 5340 7021 6652 4172 5065 5073 4893 4980 3779 4057 4868 5189 4967 4388 5231 3414 6744 8895 1659 276 3005 7573 1914 2197 20698 13370 12021 20094 17117 1298 10093 6049 2745 6172 5430 4698 8367 5725 5454 3645 3976 5587 5688 5715 5519 5073 5038 5703 5605 5531 ]
T [ 6151 5891 4913 5083 4604 6557 8369 6245 5287 5514 5016 5023 5478 6387 5687 7714 4988 3928 1531 218 3378 790 8220 1658 216 298 6697 465 1861 2182 1546 2679 8620 2957 7568 6396 4131 4683 4370 5490 5473 4712 5331 5111 5202 5460 5673 4966 4840 4934 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.10 -0.05 0.05 -0.07 -0.05 -0.06 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.02 0.13 0.20 -0.01 0.13 0.07 0.00 -0.02 -0.06 0.01 -0.04 -0.02 0.14 -0.01 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.03 -0.03 0.09 0.06 -0.02 0.04 0.20 0.14 0.11 0.18 0.13 -0.02 0.14 0.06 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.04 -0.04 -0.08 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1284

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 643

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 635

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 612

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 153

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages