Detailed information of deep learning profile BP000169.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in chondrocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000169.1
Cell line/tissue: chondrocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR190BZA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 0.03 -0.00 -0.01 0.00 -0.01 ]
C [ -0.00 0.01 -0.00 0.03 0.08 -0.00 0.22 0.32 0.11 0.14 0.34 0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ -0.00 0.01 0.02 0.05 0.00 0.20 0.00 -0.00 0.00 0.00 0.00 -0.00 0.05 0.09 0.00 0.35 0.21 ]
T [ -0.01 0.02 -0.00 -0.00 0.03 -0.00 0.00 0.00 -0.00 0.03 0.00 0.16 -0.00 0.00 0.06 0.00 -0.00 ]

Frequency matrix

       
A [ 6 7 11 3 6 10 9 5 11 10 6 5 8 12 8 5 5 8 2 3 6 6 6 5 7 6 6 10 7 10 12 9 6 12 1 21 3 1 1 5 0 13 0 1 5 13 2 7 0 3 ]
C [ 16 14 8 11 17 12 9 12 11 5 10 14 17 14 13 23 23 19 22 22 20 17 24 24 27 24 21 17 19 18 15 19 15 13 13 1 15 15 1 31 36 22 22 36 6 1 17 7 1 0 ]
G [ 8 7 11 10 7 8 8 10 5 11 11 11 8 3 8 5 8 3 3 5 5 4 1 1 0 0 6 6 4 6 2 4 5 2 9 11 17 0 30 0 1 1 0 0 1 21 16 1 36 33 ]
T [ 7 9 7 13 7 7 11 10 10 11 10 7 4 8 8 4 1 7 10 7 6 10 6 7 3 7 4 4 7 3 8 5 11 10 14 4 2 21 5 1 0 1 15 0 25 2 2 22 0 1 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.03 0.07 -0.07 0.08 -0.02 -0.10 -0.05 0.00 -0.10 0.06 -0.14 -0.08 -0.05 0.11 -0.11 -0.04 -0.16 -0.08 ]
C [ 0.02 0.06 -0.01 0.03 0.04 -0.03 0.08 0.23 -0.06 0.26 0.32 0.19 0.26 0.34 0.05 -0.04 0.08 0.11 -0.09 -0.08 ]
G [ 0.04 0.02 0.03 0.03 0.07 0.09 0.14 -0.04 0.25 -0.10 -0.13 -0.02 -0.17 -0.09 -0.03 0.09 0.22 -0.04 0.36 0.22 ]
T [ 0.02 0.00 0.03 -0.03 0.07 -0.02 -0.03 0.06 -0.03 -0.12 -0.12 -0.12 0.10 -0.11 0.22 -0.01 -0.05 0.10 -0.06 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000121.1 CTCF ENCSR035OXA A549 Homo sapiens MA0139.2
BP000122.1 CTCF ENCSR036EGV foreskin keratinocyte Homo sapiens MA0139.2
BP000123.1 CTCF ENCSR037GKL stomach Homo sapiens MA0139.2
BP000124.1 CTCF ENCSR038FOS suprapubic skin Homo sapiens MA0139.2
BP000125.1 CTCF ENCSR038VWU mucosa of descending colon Homo sapiens MA0139.2
BP000126.1 CTCF ENCSR048RGR HCT116 Homo sapiens MA0139.2
BP000127.1 CTCF ENCSR059BCO HCT116 Homo sapiens MA0139.2
BP000128.1 CTCF ENCSR059KXR middle frontal area 46 Homo sapiens MA0139.2
BP000129.1 CTCF ENCSR062JAC middle frontal area 46 Homo sapiens MA0139.2
BP000130.1 CTCF ENCSR066BZZ bipolar neuron Homo sapiens MA0139.2
Showing 10 profiles of page 13 from 45 pages