Detailed information of deep learning profile BP000125.1

  1. Home
  2. Deep Learning Profile > BP000125.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in mucosa of descending colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000125.1
Cell line/tissue: mucosa of descending colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR038VWU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3750 3213 2969 4800 6471 4428 3029 3961 3065 3461 4372 4465 4774 4756 4143 2418 3674 5015 1661 432 12545 1038 2747 15730 214 7015 955 262 439 2435 7201 1626 2460 6547 3073 5479 3707 4648 4140 3693 4726 5997 3625 4437 4774 5307 4685 4542 4636 4590 ]
C [ 4682 3314 5015 6290 4050 3545 2904 4621 8046 6860 6088 5528 4960 4279 4751 6112 3826 1911 14508 17754 866 10783 7432 558 91 151 731 131 775 13956 820 9653 6449 4594 3889 3611 3331 5249 6337 7762 6394 3766 5398 4486 4353 4240 4348 4594 4867 4950 ]
G [ 4853 6871 6637 3324 4573 4532 4303 4338 2924 3343 4187 4494 4235 3905 4887 2720 6823 8460 1208 182 2973 6189 1524 1331 18067 11162 10466 17930 15942 684 9715 5640 2005 5509 5195 4145 8258 5077 4658 2684 2867 5216 5118 5268 4974 4311 4435 5440 5118 5010 ]
T [ 5211 5098 3875 4082 3402 5991 8260 5576 4461 4832 3849 4009 4527 5556 4715 7246 4173 3110 1119 128 2112 486 6793 877 124 168 6344 173 1340 1421 760 1577 7582 1846 6339 5261 3200 3522 3361 4357 4509 3517 4355 4305 4395 4638 5028 3920 3875 3946 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.04 -0.04 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.01 0.02 0.05 0.03 -0.01 0.10 0.15 -0.04 0.09 0.04 -0.01 -0.02 -0.06 0.00 -0.04 -0.03 0.10 -0.03 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.01 0.14 0.10 0.08 0.14 0.10 -0.02 0.11 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.00 0.01 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.02 -0.04 0.02 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 379

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 327

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages