Detailed information of deep learning profile BP000130.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in bipolar neuron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000130.1
Cell line/tissue: bipolar neuron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR066BZZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.14 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.08 0.05 0.15 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3015 3919 4635 3719 3073 3631 2965 3151 3595 3678 3465 3677 3592 2563 3573 3942 2284 1357 7594 1815 2610 11147 303 5042 1931 212 240 2465 5509 1634 2326 5100 2569 4091 2996 3976 3354 3340 3715 4221 3361 3824 3825 3868 3798 3862 3650 3875 3725 3587 ]
C [ 3784 4240 3419 3241 2929 3723 5221 4793 4257 4018 3941 3860 3957 4721 3322 2167 9724 12473 1417 6392 5461 390 59 96 476 48 414 10373 944 7142 4684 3343 3251 3032 3079 3795 4128 4884 4244 3533 3794 3553 3508 3668 3705 3506 3674 3656 3528 3651 ]
G [ 4694 3223 3462 3579 3658 3389 2866 3184 3460 3516 3770 3180 3508 2762 4386 5902 1538 573 2458 5744 1791 1910 14190 9414 7925 14370 13245 591 7312 4307 1615 4530 3873 3134 5881 3907 4378 3148 3199 3791 4089 3910 4120 3739 3708 3931 4182 3847 3974 3996 ]
T [ 3295 3406 3272 4249 5128 4045 3736 3660 3476 3576 3612 4071 3731 4742 3507 2777 1242 385 3319 837 4926 1341 236 236 4456 158 889 1359 1023 1705 6163 1815 5095 4531 2832 3110 2928 3416 3630 3243 3544 3501 3335 3513 3577 3489 3282 3410 3561 3554 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.01 -0.01 0.08 -0.05 0.04 -0.05 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.10 0.16 -0.01 0.10 0.05 -0.00 -0.03 -0.07 -0.01 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.02 0.06 0.05 -0.01 0.03 0.17 0.13 0.10 0.16 0.12 -0.02 0.12 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.01 -0.05 0.05 -0.02 -0.03 -0.06 0.02 -0.05 0.00 -0.02 -0.05 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6927

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 297

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages