Detailed information of deep learning profile BP000121.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000121.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR035OXA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.01 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 -0.00 0.01 0.05 -0.00 0.09 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.03 0.00 0.08 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.05 -0.00 0.17 0.09 0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 ]

Frequency matrix

       
A [ 22 89 24 10 33 26 5 82 8 3 15 76 17 27 3 16 51 49 89 55 66 57 53 42 54 45 53 86 135 24 40 50 8 153 46 37 52 57 56 63 60 61 52 50 54 53 72 51 54 59 ]
C [ 54 21 51 81 19 139 181 96 112 174 27 13 71 21 2 12 81 77 11 32 26 44 39 61 42 21 40 52 13 69 18 8 176 13 26 63 55 50 56 34 41 42 51 48 46 45 33 46 45 46 ]
G [ 42 60 91 20 105 20 3 3 5 8 5 69 94 10 186 149 17 28 62 60 52 52 58 52 54 94 67 15 24 36 22 118 5 13 88 51 44 56 39 45 58 39 43 33 55 54 43 47 41 41 ]
T [ 82 30 34 89 43 15 11 19 75 15 153 42 18 142 9 23 51 46 38 53 56 47 50 45 50 40 40 47 28 71 120 24 11 21 40 49 49 37 49 58 41 58 54 69 45 48 52 56 60 54 ]

Hypothetical CWM

   
A [ -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.03 -0.00 0.04 0.12 -0.02 0.12 0.16 0.11 0.12 0.18 0.03 -0.00 0.05 0.07 -0.01 -0.02 0.05 0.04 0.00 0.02 0.01 0.01 0.00 ]
G [ 0.04 0.05 0.07 0.00 0.13 -0.01 -0.02 -0.00 -0.04 -0.02 -0.00 0.05 0.12 -0.01 0.17 0.11 -0.00 0.03 0.04 0.01 0.01 0.01 0.02 ]
T [ 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.07 0.04 -0.04 0.08 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17936

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 116

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages