Detailed information of deep learning profile BP000124.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000124.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR038FOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ -0.00 0.01 0.00 -0.00 0.05 0.11 -0.00 0.04 0.01 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 -0.00 0.02 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.08 0.04 0.03 0.09 0.06 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 1519 1209 1066 2099 3028 1953 1208 1665 1117 1381 1923 2058 2073 2161 1800 886 1417 2132 667 66 5851 288 1117 7225 98 2963 336 127 292 933 3199 732 1050 2911 1260 2563 1642 1898 1870 1493 1992 2827 1428 2004 2062 2517 1998 1799 1972 1935 ]
C [ 2382 1442 2296 3213 1803 1656 1218 2086 4239 3584 3038 2803 2473 1914 2035 2851 1721 836 6894 8259 304 5332 4055 306 66 96 381 56 358 6591 335 4371 3127 2165 1864 1761 1473 2646 3269 3974 3242 1617 2681 2173 2236 1950 2111 2261 2303 2430 ]
G [ 2229 3322 3520 1367 2221 2144 1914 2077 1205 1387 1867 1957 1938 1736 2392 1081 3599 4159 443 40 1495 2596 682 544 8187 5267 4784 8121 7158 261 4577 2635 1039 2618 2616 1945 3974 2470 1849 1142 1243 2517 2456 2421 2198 1875 2026 2689 2480 2386 ]
T [ 2262 2419 1510 1713 1340 2639 4052 2564 1831 2040 1564 1574 1908 2581 2165 3574 1655 1265 388 27 742 176 2538 317 41 66 2891 88 584 607 281 654 3176 698 2652 2123 1303 1378 1404 1783 1915 1431 1827 1794 1896 2050 2257 1643 1637 1641 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 -0.02 -0.02 0.01 -0.01 -0.03 0.03 -0.03 -0.02 0.06 -0.04 0.03 -0.05 -0.03 -0.02 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.02 0.01 0.00 0.01 0.03 0.01 -0.02 0.07 0.11 -0.03 0.06 0.02 -0.01 -0.01 -0.03 0.00 -0.03 -0.03 0.07 -0.03 0.03 0.01 0.01 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.02 0.03 -0.02 -0.03 0.05 0.02 -0.02 0.01 0.08 0.07 0.05 0.09 0.07 -0.03 0.07 0.02 -0.01 0.01 0.01 0.00 0.02 0.00 ]
T [ -0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.05 -0.03 -0.04 0.03 -0.05 -0.04 -0.06 0.01 -0.03 -0.01 -0.01 -0.04 -0.01 0.02 -0.03 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages