Detailed information of deep learning profile BP000128.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000128.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR059KXR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4564 4445 4535 5259 5103 4766 4707 4880 4377 5065 5050 4139 4316 3860 5935 7026 2754 8126 2535 1360 1902 1673 304 6080 289 198 1608 7561 796 3254 216 1527 3719 4664 7043 5243 5725 5058 4746 4548 5142 4922 5649 7766 6138 4316 4709 4618 5394 5768 ]
C [ 5215 5322 5375 4700 4674 5323 5498 5345 5263 3720 3452 5156 5402 7869 4527 5087 5877 2413 5459 9843 1066 16259 19148 11456 12444 19325 2208 1872 7242 2941 309 1597 8377 6294 3324 4943 4248 4645 4813 4589 3862 3532 4719 4545 4706 4728 4075 6199 6585 5006 ]
G [ 5053 5078 4823 4794 4717 4667 4761 5354 4355 6000 6850 6173 5171 3881 3899 4271 4674 6275 9919 1514 13490 1260 124 865 196 76 598 7161 10249 1346 18799 14656 2509 4562 6639 5318 4883 5113 5485 5935 6669 7607 4962 3657 4152 4407 5831 5156 3895 4688 ]
T [ 5108 5095 5207 5187 5446 5184 4974 4361 5945 5155 4588 4472 5051 4330 5579 3556 6635 3126 2027 7223 3482 748 364 1539 7011 341 15526 3346 1653 12399 616 2160 5335 4420 2934 4436 5084 5124 4896 4868 4267 3879 4610 3972 4944 6489 5325 3967 4066 4478 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.03 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.05 0.13 -0.02 0.13 0.18 0.11 0.13 0.18 0.03 -0.01 0.06 0.08 -0.02 -0.03 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.13 -0.03 -0.04 0.01 -0.05 -0.01 0.01 0.06 0.12 -0.01 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 819

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 621

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 604

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 544

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 138

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages