Detailed information of deep learning profile BP000123.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000123.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR037GKL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4184 3716 3462 5182 6637 4643 3467 4237 3477 3904 4544 4656 4824 4920 4256 2620 4075 5213 1741 497 12576 1147 2861 15548 235 7137 1081 306 605 2991 7448 2015 2758 6589 3447 5522 4070 4735 4239 3908 4874 6012 3917 4685 5036 5377 4957 4780 4893 4758 ]
C [ 4323 3152 4712 5666 3725 3451 2915 4390 7531 6407 5660 5163 4700 4147 4617 5861 3824 1908 14344 17648 891 10399 7049 461 66 139 657 178 1034 12706 1287 9027 5900 4388 3714 3426 3326 4913 5883 7015 5825 3763 4953 4244 4175 4054 4195 4307 4541 4570 ]
G [ 4541 6327 6115 3234 4400 4294 3920 4112 2790 3166 4003 4231 4052 3595 4527 2711 6135 7956 1178 165 2636 6374 1344 1480 18073 11006 10307 17726 15290 959 8641 5371 2078 5285 4760 4032 7571 4812 4556 2783 3002 4798 4844 5001 4631 4147 4201 5041 4877 4825 ]
T [ 5420 5273 4179 4386 3706 6080 8166 5729 4670 4991 4261 4418 4892 5806 5068 7276 4434 3391 1205 158 2365 548 7214 979 94 186 6423 258 1539 1812 1092 2055 7732 2206 6547 5488 3501 4008 3790 4762 4767 3895 4754 4538 4626 4890 5115 4340 4157 4315 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.08 -0.04 0.04 -0.06 -0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.15 -0.03 0.10 0.04 -0.00 -0.01 -0.06 0.01 -0.03 -0.03 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.01 0.07 0.04 -0.02 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1016

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 115

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages