Detailed information of deep learning profile BP000129.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000129.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR062JAC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 0.00 -0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.07 0.06 0.19 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3893 5232 6689 4841 3893 4509 3830 4143 4758 4859 5090 5210 4566 2966 4453 5251 2072 680 12612 1440 3369 15612 358 7608 1314 336 533 3028 7906 1895 2880 6917 3489 5703 4387 4952 4500 4309 5139 6247 4216 5043 5289 5650 5194 5141 5148 5077 5076 4796 ]
C [ 5002 6050 4151 3986 3507 4974 7605 6713 5941 5481 5164 4593 5004 6414 4323 2464 14649 18655 1170 10655 7084 691 110 225 993 124 929 14295 1149 9908 6442 4762 4159 3798 3573 5266 6439 7381 6211 4154 5480 4661 4544 4526 4721 4845 5036 5031 5001 5113 ]
G [ 6335 3854 4690 4804 4491 4577 3453 3782 4477 4876 4600 4162 5112 3306 6393 8471 1605 271 3259 6993 1833 2040 19190 11771 10957 19111 16726 831 9641 5829 2242 5843 5092 4312 8227 5361 4945 3138 3413 5331 5357 5366 5189 4503 4563 5317 5225 5244 5048 5268 ]
T [ 4615 4709 4315 6214 7954 5785 4957 5207 4669 4629 4991 5880 5163 7159 4676 3659 1519 239 2804 757 7559 1502 187 241 6581 274 1657 1691 1149 2213 8281 2323 7105 6032 3658 4266 3961 5017 5082 4113 4792 4775 4823 5166 5367 4542 4436 4493 4720 4668 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.04 0.06 -0.07 -0.05 -0.06 -0.02 0.02 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.01 0.13 0.20 -0.02 0.14 0.07 0.01 -0.01 -0.05 0.01 -0.03 -0.03 0.15 -0.01 0.08 0.06 0.04 0.02 0.01 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.10 0.06 -0.01 0.03 0.20 0.15 0.12 0.20 0.16 -0.02 0.16 0.06 0.00 0.04 0.03 0.01 0.05 0.02 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.02 -0.07 -0.01 0.04 -0.05 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2057

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 565

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 212

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 34

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages