Detailed information of deep learning profile BP000122.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000122.1
Cell line/tissue: foreskin keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR036EGV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.05 0.03 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4888 4644 4277 5581 6747 5397 4304 4919 4268 4621 5147 5319 5137 5300 4758 3403 5106 5578 2672 962 11975 1967 3732 15535 506 6815 2790 700 1081 4232 7216 2419 3618 6804 3940 5806 4548 5276 4837 4689 5371 6243 4655 5404 5531 5663 5464 5488 5348 5302 ]
C [ 5068 4209 5354 6165 4751 4629 4080 5177 7886 6931 6167 5749 5493 5212 5847 7004 4864 2859 14689 19399 1607 9981 7801 782 204 355 1210 282 1709 12982 1911 10106 6595 5119 4709 4415 4189 5519 6431 7249 6183 4687 5517 5018 4923 5055 5083 5208 5345 5242 ]
G [ 5374 6492 6696 4426 5039 4978 4870 5005 3870 4256 4751 5095 5054 4517 5081 3702 5902 8483 2110 440 3170 8136 2584 2779 20025 13553 10115 19443 16335 1446 10420 5620 2791 6134 5480 4749 8132 5754 5414 3981 4078 5530 5863 5659 5602 5100 5200 5558 5610 5525 ]
T [ 5796 5781 4799 4954 4589 6122 7872 6025 5102 5318 5061 4963 5442 6097 5440 7017 5254 4206 1655 325 4374 1042 7009 2030 391 403 7011 701 2001 2466 1579 2981 8122 3069 6997 6156 4257 4577 4444 5207 5494 4666 5091 5045 5070 5308 5379 4872 4823 5057 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 -0.01 0.02 -0.00 -0.01 0.03 -0.01 -0.01 0.07 -0.03 0.04 -0.03 -0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.03 0.03 -0.01 0.08 0.13 -0.01 0.08 0.04 -0.01 -0.02 -0.05 0.00 -0.03 -0.02 0.09 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 -0.00 0.02 0.04 -0.02 -0.03 0.05 0.04 -0.01 0.02 0.13 0.10 0.07 0.12 0.10 -0.01 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.05 -0.01 -0.04 0.04 -0.02 -0.02 -0.04 0.03 -0.02 0.01 -0.01 -0.04 -0.01 0.03 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1084

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 1054

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_3

Num. of seqlets: 128

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_4

Num. of seqlets: 125

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages