Detailed information of deep learning profile BP000126.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000126.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR048RGR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.06 0.14 0.08 0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3825 3388 3206 4760 5885 4176 3253 4022 2948 3759 4159 4432 4010 4278 3626 2456 3588 5002 1601 867 10143 1531 2470 12878 269 3984 2043 694 1637 3719 5214 2684 3419 5018 3614 4485 3786 4342 3922 4168 4264 4549 4079 4172 4253 4215 4169 4202 4312 4194 ]
C [ 3663 2818 4302 4875 3541 3292 2792 4002 7206 5835 5043 4340 4283 3749 4715 5580 4055 2100 12725 14965 1231 8489 6302 385 145 146 882 713 2070 8575 2639 6440 4498 3620 3454 3488 3548 3996 4392 4736 4289 3766 3951 3870 3910 4043 3928 3970 4048 4028 ]
G [ 3944 5686 5213 2988 3663 3634 3388 3633 2416 2670 3456 3840 3599 3224 3717 2415 4970 6211 1082 286 1766 5702 1320 1928 15727 11813 9519 14010 10809 1834 6611 4281 2806 4611 4328 3870 5432 4212 4341 3467 3751 4040 4149 4167 4203 3873 3999 4171 4178 4032 ]
T [ 4959 4499 3670 3768 3302 5289 6958 4734 3821 4127 3733 3779 4499 5140 4333 5940 3778 3078 983 273 3251 669 6299 1200 250 448 3947 974 1875 2263 1927 2986 5668 3142 4995 4548 3625 3841 3736 4020 4087 4036 4212 4182 4025 4260 4295 4048 3853 4137 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.03 -0.01 -0.03 0.05 -0.02 -0.02 0.10 -0.06 0.03 -0.05 -0.06 -0.05 -0.01 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.04 -0.02 0.14 0.19 -0.04 0.12 0.05 -0.03 -0.04 -0.08 -0.01 -0.04 -0.03 0.09 -0.01 0.05 0.03 0.02 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.04 0.05 -0.05 -0.04 0.06 0.05 -0.04 0.02 0.19 0.13 0.10 0.16 0.11 -0.01 0.09 0.02 -0.01 0.02 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.03 -0.01 -0.02 -0.05 -0.09 -0.02 -0.07 0.07 -0.03 -0.05 -0.06 0.01 -0.04 -0.01 -0.02 -0.04 -0.01 0.02 -0.02 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1803

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 157

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages