Detailed information of deep learning profile BP000127.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000127.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR059BCO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.01 0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.07 0.05 0.12 0.07 0.00 0.03 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4072 3402 3151 4730 6712 4554 3052 4294 2887 3829 4308 4551 4350 4279 3700 2475 3623 5226 1569 615 11172 1388 2532 13961 188 4659 1773 708 1662 3601 5796 2819 3301 5561 3688 4770 3951 4454 4199 4152 4677 5045 4030 4411 4511 4596 4593 4463 4587 4456 ]
C [ 3840 2657 4150 5448 3419 3197 2583 3977 7827 6148 5401 4569 4270 3976 4832 5826 4014 1909 13622 16015 1017 9362 6645 336 67 141 806 652 1746 9296 2385 6977 4819 3716 3411 3318 3363 4277 4762 5179 4483 3687 4276 3873 3987 4045 4046 4089 4090 4169 ]
G [ 4056 5930 6039 2861 3640 3833 3351 3462 2293 2600 3509 3839 3568 3257 3781 2320 5310 6692 924 219 1814 5700 1167 1635 16643 11763 9841 14565 11705 1835 6930 4425 2722 4768 4441 3903 5949 4404 4324 3274 3520 4250 4336 4330 4217 3743 3898 4331 4274 4236 ]
T [ 5058 5037 3686 3987 3255 5442 8040 5293 4019 4449 3808 4067 4838 5514 4713 6405 4079 3199 911 177 3023 576 6682 1094 128 463 4606 1101 1913 2294 1915 2805 6184 2981 5486 5035 3763 3891 3741 4421 4346 4044 4384 4412 4311 4642 4489 4143 4075 4165 ]

Hypothetical CWM

   
A [ 0.02 0.01 -0.01 0.01 -0.01 -0.01 0.00 0.00 0.01 0.01 -0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.08 -0.06 0.02 -0.05 -0.05 -0.04 -0.00 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ -0.00 -0.01 -0.03 -0.00 0.05 0.03 0.03 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.11 0.16 -0.03 0.10 0.04 -0.03 -0.03 -0.07 -0.01 -0.03 -0.02 0.08 -0.00 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.00 -0.01 -0.01 -0.03 -0.01 0.00 0.00 0.01 0.00 0.01 -0.01 0.03 0.04 -0.03 -0.02 0.06 0.04 -0.03 0.01 0.16 0.11 0.08 0.13 0.09 -0.01 0.07 0.02 -0.00 0.01 0.01 ]
T [ -0.01 0.01 0.04 0.01 0.00 0.00 -0.00 0.00 0.01 0.01 0.01 0.03 -0.01 -0.01 -0.04 -0.08 -0.02 -0.06 0.05 -0.04 -0.04 -0.05 0.01 -0.04 -0.00 -0.02 -0.04 -0.00 0.02 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 130

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages