Detailed information of deep learning profile BP000143.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000143.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR089NBS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.00 0.05 0.00 -0.00 0.07 0.01 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.01 -0.01 ]
C [ 0.03 0.16 0.22 0.04 0.11 0.07 -0.00 0.00 0.00 0.02 0.00 0.01 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.05 0.00 -0.00 0.01 0.03 0.01 0.01 0.19 0.12 0.08 0.22 0.11 -0.00 0.06 0.01 -0.00 0.01 -0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.01 0.04 0.03 0.00 0.01 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.01 ]

Frequency matrix

       
A [ 7 3 0 18 0 2 16 3 4 0 1 1 6 10 4 6 6 6 3 3 8 3 5 4 4 2 6 2 4 5 4 6 7 4 5 9 7 5 5 6 7 8 6 5 8 8 7 5 5 9 ]
C [ 6 29 30 7 19 16 1 1 1 3 0 4 18 0 16 5 5 3 3 6 5 1 4 4 1 1 2 2 1 2 2 5 3 5 3 3 7 10 14 14 9 8 11 9 8 9 4 9 12 8 ]
G [ 17 0 1 5 9 5 9 28 23 15 30 22 4 21 11 7 19 10 18 21 11 23 18 16 22 26 20 24 16 22 18 20 19 18 21 17 15 13 5 5 9 8 10 13 14 10 11 11 10 10 ]
T [ 2 0 1 2 4 9 6 0 4 14 1 5 4 1 1 14 2 13 8 2 8 5 5 8 5 3 4 4 11 3 8 1 3 5 3 3 3 4 8 7 7 8 5 5 2 5 10 7 5 5 ]

Hypothetical CWM

   
A [ 0.03 -0.01 -0.03 0.05 -0.06 -0.01 0.09 -0.04 0.02 -0.08 -0.06 -0.06 -0.02 0.04 -0.01 0.00 0.04 -0.01 ]
C [ 0.01 0.18 0.22 0.03 0.17 0.08 0.00 -0.02 -0.03 0.02 -0.08 -0.01 0.14 -0.00 0.06 0.04 0.04 0.03 ]
G [ 0.06 -0.05 -0.06 0.04 0.03 -0.01 0.03 0.20 0.14 0.11 0.23 0.13 -0.04 0.12 0.04 -0.01 0.02 0.01 ]
T [ -0.03 -0.06 -0.08 -0.02 -0.04 0.06 0.01 -0.05 -0.06 0.02 -0.07 0.01 -0.00 -0.08 -0.01 0.04 -0.03 0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 521

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 205

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000131.1 CTCF ENCSR066GBX right atrium auricular region Homo sapiens MA0139.2
BP000132.1 CTCF ENCSR068DJS middle frontal area 46 Homo sapiens MA0139.2
BP000133.1 CTCF ENCSR068HEE left ventricle myocardium inferior Homo sapiens MA0139.2
BP000134.1 CTCF ENCSR071XWO gastrocnemius medialis Homo sapiens MA0139.2
BP000135.1 CTCF ENCSR072EUE OCI-LY1 Homo sapiens MA0139.2
BP000136.1 CTCF ENCSR073BPG middle frontal area 46 Homo sapiens MA0139.2
BP000137.1 CTCF ENCSR073TPC esophagus muscularis mucosa Homo sapiens MA0139.2
BP000138.1 CTCF ENCSR074SFL esophagus muscularis mucosa Homo sapiens MA0139.2
BP000139.1 CTCF ENCSR075NRV B cell Homo sapiens MA0139.2
BP000140.1 CTCF ENCSR079YAP tibial artery Homo sapiens MA0139.2
Showing 10 profiles of page 14 from 45 pages