Detailed information of deep learning profile BP000007.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000007.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AMA
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.11 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.10 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4732 4496 4649 5178 5087 4798 4838 4988 4489 5043 4910 4163 4374 3908 5760 6738 3022 7807 2853 1714 2152 1946 590 5999 371 236 1558 7210 810 3625 304 1373 3798 4743 7074 5131 5998 5191 4789 4641 5079 4836 5894 7961 6136 4168 4717 4533 5649 5769 ]
C [ 5183 5369 5256 4790 4839 5181 5285 5267 5197 4077 3776 5232 5303 7510 4650 5258 5843 2599 5384 8922 1506 15091 18539 11321 13117 19269 2190 1747 7315 2882 369 1534 8255 6494 3045 4912 4182 4564 4670 4442 3638 3447 4571 4458 4653 4626 3805 6555 6552 5012 ]
G [ 5079 5047 4896 4804 4745 4625 4800 5117 4442 5734 6767 5985 5113 4164 4047 4136 4592 6121 9324 2221 12464 1792 297 661 157 110 462 7861 10136 1386 18317 14971 2384 4275 6646 5522 4641 5131 5411 5988 6840 7850 4755 3641 4122 4386 6038 4980 3597 4669 ]
T [ 4966 5048 5159 5188 5289 5356 5037 4588 5832 5106 4507 4580 5170 4378 5503 3828 6503 3433 2399 7103 3838 1131 534 1979 6315 345 15749 3142 1699 12067 970 2082 5523 4448 3195 4395 5139 5074 5090 4889 4403 3827 4740 3900 5049 6780 5400 3892 4162 4510 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.06 -0.05 -0.03 0.06 -0.07 -0.02 -0.08 -0.05 -0.02 -0.01 0.02 0.00 0.01 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.04 0.12 -0.02 0.13 0.18 0.11 0.14 0.19 0.03 -0.03 0.05 0.07 -0.05 -0.03 0.06 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.05 0.00 -0.07 -0.03 -0.03 0.06 0.12 -0.03 0.19 0.12 -0.02 0.04 0.05 0.03 0.01 ]
T [ 0.01 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.06 0.03 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000142.1 CTCF ENCSR089DTY omental fat pad Homo sapiens MA0139.2
BP000143.1 CTCF ENCSR089NBS heart right ventricle Homo sapiens MA0139.2
BP000144.1 CTCF ENCSR092VKJ middle frontal area 46 Homo sapiens MA0139.2
BP000145.1 CTCF ENCSR094PSL middle frontal area 46 Homo sapiens MA0139.2
BP000146.1 CTCF ENCSR102CSD transverse colon Homo sapiens MA0139.2
BP000147.1 CTCF ENCSR105HEC activated B cell Homo sapiens MA0139.2
BP000148.1 CTCF ENCSR105KGD heart right ventricle Homo sapiens MA0139.2
BP000149.1 CTCF ENCSR107GWZ HCT116 Homo sapiens MA0139.2
BP000150.1 CTCF ENCSR113COJ pancreas Homo sapiens MA0139.2
BP000151.1 CTCF ENCSR116AKQ CD8-positive and alpha-beta T cell Homo sapiens MA0139.2
Showing 10 profiles of page 15 from 45 pages