Detailed information of deep learning profile BP000142.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in omental fat pad using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000142.1
Cell line/tissue: omental fat pad
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR089DTY
Model: BPNet
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Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ -0.00 0.01 0.00 -0.00 0.06 0.10 -0.00 0.04 0.01 -0.00 0.00 0.00 0.00 0.00 -0.00 0.05 -0.00 0.02 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.08 0.04 0.03 0.09 0.06 -0.00 0.04 0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

A [ 1175 952 867 1704 2399 1552 996 1383 926 1156 1493 1598 1656 1697 1443 702 1104 1773 482 81 4556 221 893 5696 88 2168 277 127 225 689 2371 607 873 2326 1054 2021 1265 1379 1481 1169 1564 2172 1155 1494 1649 1983 1576 1421 1606 1545 ]
C [ 1982 1255 1946 2633 1513 1398 1090 1777 3443 2857 2518 2373 2072 1563 1743 2408 1474 701 5636 6654 313 4343 3434 326 119 133 432 86 313 5498 287 3677 2559 1798 1673 1517 1280 2220 2703 3218 2605 1335 2274 1848 1856 1649 1735 1892 1911 2039 ]
G [ 1874 2760 2817 1189 1877 1843 1631 1718 1046 1269 1612 1653 1639 1530 2034 906 2978 3332 464 69 1433 2136 556 537 6577 4490 3926 6567 5860 205 3967 2093 957 2207 2074 1676 3245 2094 1531 1004 1139 2221 1981 2049 1799 1584 1714 2236 2099 1973 ]
T [ 1814 1878 1215 1319 1056 2052 3128 1967 1430 1563 1222 1221 1478 2055 1625 2829 1289 1039 263 41 543 145 1962 286 61 54 2210 65 447 453 220 468 2456 514 2044 1631 1055 1152 1130 1454 1537 1117 1435 1454 1541 1629 1820 1296 1229 1288 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 0.00 -0.02 -0.02 0.01 -0.02 -0.03 0.02 -0.04 -0.02 0.05 -0.04 0.02 -0.06 -0.03 -0.02 -0.02 0.01 -0.01 -0.01 0.02 -0.01 0.01 ]
C [ 0.01 0.01 0.00 0.00 0.03 0.01 -0.02 0.07 0.11 -0.03 0.06 0.02 -0.01 -0.01 -0.03 -0.00 -0.03 -0.03 0.07 -0.03 0.03 0.01 0.00 0.00 -0.00 ]
G [ -0.00 0.00 -0.00 0.00 -0.01 0.02 0.03 -0.03 -0.03 0.04 0.02 -0.02 0.00 0.08 0.07 0.05 0.09 0.07 -0.03 0.07 0.01 -0.01 0.01 0.00 -0.00 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.05 -0.04 -0.04 0.02 -0.05 -0.04 -0.06 0.01 -0.04 -0.01 -0.02 -0.05 -0.02 0.02 -0.03 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages