Detailed information of deep learning profile BP000150.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000150.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR113COJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3357 2812 2617 4397 6034 4057 2716 3628 2690 3138 3932 4140 4371 4407 3796 1984 3284 4599 1353 233 11730 727 2364 14232 149 6417 715 239 456 2192 6676 1598 2270 5983 2885 5062 3401 4052 3723 3290 4339 5463 3297 4071 4335 4926 4270 4078 4195 4101 ]
C [ 4050 2759 4310 5557 3349 3023 2374 4019 7351 6127 5506 4973 4384 3604 3966 5320 3278 1575 13374 16040 626 10108 6649 449 52 99 560 105 709 12218 815 8218 5650 4039 3355 3130 2912 4686 5701 6898 5632 3263 4785 3890 3821 3708 3778 3992 4263 4303 ]
G [ 4218 6100 5999 2750 4064 3887 3577 3707 2339 2745 3564 3770 3551 3227 4247 2259 6123 7481 826 68 2316 5205 1134 1078 16140 9763 9309 15870 14011 636 8186 5170 1836 4722 4580 3581 7163 4374 3929 2270 2364 4511 4416 4546 4255 3542 3804 4704 4459 4399 ]
T [ 4788 4742 3487 3709 2966 5446 7746 5059 4033 4403 3411 3530 4107 5175 4404 6850 3728 2758 860 72 1741 373 6266 654 72 134 5829 199 1237 1367 736 1427 6657 1669 5593 4640 2937 3301 3060 3955 4078 3176 3915 3906 4002 4237 4561 3639 3496 3610 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.02 -0.03 0.03 -0.03 -0.02 0.08 -0.04 0.04 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.03 -0.02 0.10 0.14 -0.04 0.09 0.04 -0.01 -0.02 -0.06 -0.00 -0.03 -0.03 0.10 -0.03 0.04 0.02 0.01 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.01 0.14 0.10 0.08 0.13 0.10 -0.03 0.10 0.03 -0.00 0.02 0.01 -0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.01 -0.04 -0.07 -0.03 -0.05 0.05 -0.04 -0.05 -0.07 0.01 -0.04 -0.00 -0.03 -0.06 -0.02 0.02 -0.03 0.02 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 255

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 164

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages