Detailed information of deep learning profile BP000145.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000145.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR094PSL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4655 4173 4012 5430 6732 5056 3981 4721 3921 4326 4983 4991 5161 5220 4505 3072 4525 5573 2173 1001 12127 1739 3306 15925 370 6711 1780 497 1082 3688 7370 2297 3349 6672 3753 5525 4547 5171 4628 4646 5104 5883 4536 5162 5326 5505 5312 5207 5246 5219 ]
C [ 4981 4012 5450 6331 4562 4466 3890 5129 8201 7173 6263 5667 5475 5075 5715 7054 4905 2610 15309 18965 1463 10887 7615 692 116 294 1090 362 1808 13394 2084 9579 6381 4857 4561 4261 4098 5416 6308 7036 6136 4696 5486 5039 4890 4942 4935 5140 5331 5232 ]
G [ 5195 6876 6552 4112 4960 4919 4665 4901 3592 3970 4728 5118 4831 4381 5068 3347 6518 8744 1736 362 3616 7238 1879 2425 19907 13274 11895 19240 15892 1489 9557 5918 2829 6085 5415 4843 7974 5643 5428 3835 4154 5468 5575 5561 5423 5089 5029 5511 5442 5391 ]
T [ 5786 5556 4603 4744 4363 6176 8081 5866 4903 5148 4643 4841 5150 5941 5329 7144 4669 3690 1399 289 3411 753 7817 1575 224 338 5852 518 1835 2046 1606 2823 8058 3003 6888 5988 3998 4387 4253 5100 5223 4570 5020 4855 4978 5081 5341 4759 4598 4775 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.05 0.04 -0.07 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.02 0.13 0.19 -0.02 0.13 0.06 -0.01 -0.03 -0.07 -0.00 -0.04 -0.02 0.13 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.03 0.03 0.19 0.13 0.11 0.18 0.12 -0.02 0.12 0.04 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.04 -0.04 -0.07 0.02 -0.05 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1733

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 860

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 181

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages