Detailed information of deep learning profile BP000147.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in activated B cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000147.1
Cell line/tissue: activated B cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR105HEC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.04 0.04 0.11 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ -0.00 0.00 0.00 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 -0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 2131 2036 2041 2712 2428 2406 2219 2333 1792 2411 2204 1750 1796 1629 2603 3235 804 3945 690 272 681 651 42 3680 58 44 345 3482 191 802 39 511 1541 2130 4337 2632 3077 2341 1988 1954 2538 2414 3022 4722 3285 1682 2109 1892 2833 2805 ]
C [ 2596 2687 2920 2190 2134 2370 2664 2585 2750 1287 1158 2137 2598 4382 2064 2784 2712 1032 3051 5142 247 8549 9518 5475 5611 9537 473 638 3001 1410 36 469 4478 3915 1202 2649 1927 2141 2053 2026 1616 1364 2267 2085 2318 2496 1545 3753 3739 2488 ]
G [ 2583 2509 2476 2356 2163 2320 2382 2904 1867 3557 4450 3585 2980 1634 1899 2008 2473 3506 5083 308 7621 293 29 252 82 44 274 4308 6137 330 9547 7942 901 1879 3116 2148 2040 2711 3113 3390 3791 4449 2294 1348 1731 1973 3402 2570 1561 2471 ]
T [ 2388 2466 2261 2440 2973 2602 2433 1876 3289 2443 1886 2226 2324 2053 3132 1671 3709 1215 874 3976 1149 205 109 291 3947 73 8606 1270 369 7156 76 776 2778 1774 1043 2269 2654 2505 2544 2328 1753 1471 2115 1543 2364 3547 2642 1483 1565 1934 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.02 -0.03 0.03 -0.01 -0.05 -0.02 -0.00 -0.05 0.02 -0.06 -0.03 -0.03 0.04 -0.04 -0.03 -0.04 -0.02 -0.01 0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.00 0.02 0.08 -0.02 0.09 0.12 0.07 0.08 0.11 0.00 -0.02 0.03 0.04 -0.02 -0.02 0.04 0.02 -0.00 0.00 0.00 0.00 -0.00 ]
G [ 0.01 -0.00 -0.00 0.01 0.01 0.02 0.04 -0.03 0.08 -0.03 -0.04 -0.01 -0.04 -0.02 -0.01 0.03 0.07 -0.02 0.12 0.08 -0.01 0.03 0.03 0.01 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.01 0.02 -0.01 -0.03 -0.02 -0.05 0.04 -0.03 0.07 -0.01 -0.02 0.04 -0.03 -0.01 0.01 -0.02 -0.02 0.01 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 27

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages