Detailed information of deep learning profile BP000007.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000007.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AMA
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.11 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4510 4162 3892 5400 6780 5049 3900 4740 3827 4403 4889 5090 5074 5139 4395 3195 4448 5523 2082 970 12067 1699 3142 15749 345 6315 1979 534 1131 3838 7103 2399 3433 6503 3828 5503 4378 5170 4580 4507 5106 5832 4588 5037 5356 5289 5188 5159 5048 4966 ]
C [ 4669 3597 4980 6038 4386 4122 3641 4755 7850 6840 5988 5411 5131 4641 5522 6646 4275 2384 14971 18317 1386 10136 7861 462 110 157 661 297 1792 12464 2221 9324 6121 4592 4136 4047 4164 5113 5985 6767 5734 4442 5117 4800 4625 4745 4804 4896 5047 5079 ]
G [ 5012 6552 6555 3805 4626 4653 4458 4571 3447 3638 4442 4670 4564 4182 4912 3045 6494 8255 1534 369 2882 7315 1747 2190 19269 13117 11321 18539 15091 1506 8922 5384 2599 5843 5258 4650 7510 5303 5232 3776 4077 5197 5267 5285 5181 4839 4790 5256 5369 5183 ]
T [ 5769 5649 4533 4717 4168 6136 7961 5894 4836 5079 4641 4789 5191 5998 5131 7074 4743 3798 1373 304 3625 810 7210 1558 236 371 5999 590 1946 2152 1714 2853 7807 3022 6738 5760 3908 4374 4163 4910 5043 4489 4988 4838 4798 5087 5178 4649 4496 4732 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.03 -0.06 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.01 ]
C [ 0.01 0.03 0.05 0.04 -0.02 0.12 0.19 -0.03 0.12 0.06 -0.03 -0.03 -0.07 0.00 -0.05 -0.03 0.12 -0.02 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.06 -0.03 -0.05 0.07 0.05 -0.03 0.03 0.19 0.14 0.11 0.18 0.13 -0.02 0.12 0.04 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.08 -0.02 -0.07 0.06 -0.03 -0.05 -0.06 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages