Detailed information of deep learning profile BP000149.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000149.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR107GWZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.03 0.00 0.07 0.13 0.06 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 0.01 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.11 -0.00 0.01 0.02 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4124 4312 4333 4185 4245 4183 4004 4036 4099 3698 3903 3735 4554 4961 3362 5527 3047 2179 2467 2018 1375 3802 505 130 1123 6535 607 3216 211 831 3139 3835 6156 4494 5379 4714 3950 3804 4166 3755 4977 7523 5169 3214 3803 3519 4888 4956 3640 3877 ]
C [ 4095 3935 3902 4030 4119 4108 4105 3673 3487 4370 4176 5335 3861 4297 4513 2904 4163 6296 1965 10296 13405 9674 12256 16031 1767 1114 5465 1549 217 919 6115 5028 2176 3631 3159 3378 3656 3220 2463 2272 3440 3189 3683 3455 2773 5792 5525 3970 4297 4473 ]
G [ 3855 3864 3927 3915 3832 3959 3719 4172 4595 4288 3930 3542 3409 3398 3530 4373 6169 2784 8103 2110 808 874 123 63 335 6307 8936 1071 15281 13242 1894 4027 5700 4732 3749 4189 4327 5026 6164 7525 3893 2628 3249 3423 5272 4034 2610 3675 4363 3677 ]
T [ 4356 4319 4268 4300 4234 4180 4602 4549 4249 4074 4421 3818 4606 3774 5025 3626 3051 5171 3895 2006 842 2080 3546 206 13205 2474 1422 10594 721 1438 5282 3540 2398 3573 4143 4149 4497 4380 3637 2878 4120 3090 4329 6338 4582 3085 3407 3829 4130 4403 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.01 -0.01 -0.04 -0.03 -0.01 -0.04 0.00 -0.06 -0.05 -0.05 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.03 0.01 0.01 0.00 -0.00 -0.01 -0.00 -0.01 0.01 0.04 0.01 -0.02 ]
C [ 0.01 0.01 -0.00 0.02 0.07 -0.01 0.09 0.14 0.09 0.13 0.18 0.02 -0.05 0.05 0.06 -0.04 -0.05 0.04 0.04 -0.02 0.00 -0.00 0.00 -0.00 0.00 -0.01 -0.04 -0.01 -0.02 0.00 0.00 ]
G [ 0.00 0.01 0.02 0.03 -0.00 0.08 -0.03 -0.04 -0.02 -0.09 -0.04 -0.04 0.04 0.11 -0.03 0.18 0.13 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 0.03 0.04 0.06 -0.00 -0.03 -0.02 -0.01 ]
T [ -0.01 0.01 -0.01 -0.01 0.01 -0.01 -0.04 -0.06 -0.05 0.02 -0.07 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.01 0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 108

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages