Detailed information of deep learning profile BP000144.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000144.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR092VKJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4078 3688 3601 4848 6111 4496 3563 4192 3544 3951 4411 4462 4629 4743 4099 2764 4147 4844 1964 654 11475 1437 3024 14361 348 6825 1369 396 627 2913 7135 1847 2705 6403 3267 5206 4030 4558 4154 4073 4746 5574 3875 4711 4808 5164 4799 4731 4717 4669 ]
C [ 4365 3571 4717 5468 3967 3714 3394 4539 6942 6148 5428 5090 4775 4378 4876 5978 3966 2298 13454 17175 1230 9519 6577 561 98 163 782 147 1059 12896 1204 9099 5909 4407 3889 3606 3451 4829 5932 6706 5671 3892 4996 4309 4240 4261 4350 4430 4643 4586 ]
G [ 4691 6018 5833 3677 4383 4467 4245 4270 3280 3535 4216 4485 4287 3910 4625 3042 5843 7843 1527 297 2818 6655 1717 2026 17727 11111 10194 17516 15112 864 8934 5306 2126 5303 4662 4011 7433 5030 4620 2947 3260 4949 4980 4998 4892 4265 4298 4922 4929 4883 ]
T [ 5223 5080 4206 4364 3896 5680 7155 5356 4591 4723 4302 4320 4666 5326 4757 6573 4401 3372 1412 231 2834 746 7039 1409 184 258 6012 298 1559 1684 1084 2105 7617 2244 6539 5534 3443 3940 3651 4631 4680 3942 4506 4339 4417 4667 4910 4274 4068 4219 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.06 -0.07 -0.05 -0.06 -0.01 0.03 -0.03 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.04 -0.02 0.12 0.19 -0.03 0.13 0.06 0.00 -0.02 -0.06 0.01 -0.04 -0.03 0.15 -0.02 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.05 0.07 -0.02 -0.03 0.09 0.06 -0.02 0.03 0.18 0.13 0.11 0.19 0.14 -0.03 0.15 0.06 -0.01 0.03 0.02 -0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.08 0.03 -0.05 0.01 -0.03 -0.07 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1765

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 882

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 800

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 324

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 165

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages