Detailed information of deep learning profile BP000148.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000148.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR105KGD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.20 0.09 0.06 0.19 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4880 4392 4341 5506 6835 5157 4294 4736 4291 4554 4989 5247 5205 5356 4827 3495 4869 5610 2519 1521 11974 1929 3586 16135 470 7058 2149 587 938 3935 7825 2259 3376 6909 3848 5927 4602 5253 4715 4624 5320 6199 4580 5287 5573 5762 5582 5355 5368 5326 ]
C [ 5237 4469 5669 6470 4856 4740 4281 5398 8000 7266 6485 5916 5792 5337 5995 7238 4926 2956 15174 19146 1644 10699 8337 822 120 319 1157 282 1637 14055 1966 10183 6999 5406 4682 4472 4357 5749 6860 7713 6563 4913 5765 5292 5114 5134 5193 5465 5439 5471 ]
G [ 5546 6981 6754 4653 5278 5412 5178 5328 4057 4376 5006 5388 5237 4742 5420 3706 6645 9022 2118 473 4108 7975 2303 2677 20629 13779 11861 20141 17044 1471 10158 6285 2771 6404 5811 4992 8564 5968 5612 3922 4248 5834 6091 5955 5908 5322 5432 5832 5912 5742 ]
T [ 5837 5658 4736 4871 4531 6191 7747 6038 5152 5304 5020 4949 5266 6065 5258 7061 5060 3912 1689 360 3774 897 7274 1866 281 344 6333 490 1881 2039 1551 2773 8354 2781 7159 6109 3977 4530 4313 5241 5369 4554 5064 4966 4905 5282 5293 4848 4781 4961 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.06 0.05 -0.07 -0.06 -0.06 -0.02 0.03 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.02 0.13 0.21 -0.02 0.13 0.07 -0.01 -0.04 -0.07 0.00 -0.05 -0.03 0.15 -0.01 0.08 0.06 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.05 0.07 -0.03 -0.04 0.09 0.06 -0.02 0.03 0.21 0.15 0.12 0.20 0.15 -0.02 0.16 0.06 -0.01 0.03 0.02 0.00 0.05 0.02 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.10 -0.04 -0.06 0.06 -0.03 -0.05 -0.09 0.03 -0.05 0.00 -0.03 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages