Detailed information of deep learning profile BP000146.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000146.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR102CSD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3311 2997 2889 4202 5134 3755 2929 3349 2906 3274 3598 3776 3901 3847 3410 2310 3364 4099 1534 395 9833 1009 2354 12112 198 5861 1157 251 427 2358 6118 1681 2270 5313 2772 4397 3269 3857 3391 3318 3898 4679 3227 3748 4059 4268 3887 3945 3825 3906 ]
C [ 3357 2595 3680 4358 3012 2840 2439 3617 5649 4813 4376 4045 3665 3305 3740 4563 2930 1725 11036 14035 869 7693 5713 349 73 184 666 84 552 10298 944 7019 4541 3345 2908 2703 2637 3845 4651 5240 4381 3021 3921 3396 3249 3291 3366 3471 3570 3687 ]
G [ 3608 5001 4688 2783 3513 3364 3202 3308 2340 2689 3239 3279 3236 3057 3526 2246 4677 6073 1103 142 1630 5512 1247 1316 14297 8456 7456 14143 12506 594 6681 4411 1626 4267 3864 3175 5977 3896 3657 2334 2520 3826 3791 3881 3796 3329 3408 3921 3936 3707 ]
T [ 4428 4111 3447 3361 3045 4745 6134 4430 3809 3928 3491 3604 3902 4495 4028 5585 3733 2807 1031 132 2372 490 5390 927 136 203 5425 226 1219 1454 961 1593 6267 1779 5160 4429 2821 3106 3005 3812 3905 3178 3765 3679 3600 3816 4043 3367 3373 3404 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.01 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.02 -0.02 0.10 0.16 -0.02 0.10 0.05 -0.01 -0.02 -0.06 0.00 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 -0.01 0.03 0.04 -0.02 -0.03 0.06 0.04 -0.01 0.02 0.15 0.11 0.08 0.13 0.10 -0.03 0.10 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3567

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 301

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages