Detailed information of deep learning profile BP000448.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000448.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR998NQG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.03 0.12 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4106 3549 3272 5355 7373 4903 3351 4458 3390 3803 4720 5088 5302 5283 4611 2533 4050 5607 1776 358 13977 935 2985 16975 257 7900 1033 333 658 2712 8176 1997 2681 7264 3395 5982 4268 4845 4565 3868 5041 6731 3832 4923 5362 6020 5202 4934 5121 5052 ]
C [ 4985 3303 5038 6697 4064 3652 3025 4798 8796 7401 6568 5800 5284 4435 4931 6536 4032 1880 15958 19350 766 12139 8185 554 77 153 752 274 991 14573 1238 9936 6921 4873 4085 3879 3546 5661 7052 8444 6863 3868 5819 4725 4612 4297 4594 4859 5092 5204 ]
G [ 5097 7251 7388 3321 4822 4795 4271 4492 2835 3404 4372 4620 4342 3933 5088 2653 7346 8990 1099 102 2988 6343 1375 1494 19491 11681 10849 19008 16612 878 9528 6240 2226 5765 5514 4344 8672 5429 4540 2714 2871 5499 5386 5526 5052 4395 4546 5769 5417 5369 ]
T [ 5734 5819 4224 4549 3663 6572 9275 6174 4901 5314 4262 4414 4994 6271 5292 8200 4494 3445 1089 112 2191 505 7377 899 97 188 7288 307 1661 1759 980 1749 8094 2020 6928 5717 3436 3987 3765 4896 5147 3824 4885 4748 4896 5210 5580 4360 4292 4297 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.03 -0.02 0.07 -0.04 0.04 -0.04 -0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.02 -0.01 0.09 0.13 -0.03 0.08 0.04 -0.01 -0.01 -0.06 0.00 -0.03 -0.03 0.09 -0.02 0.04 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.13 0.10 0.07 0.12 0.09 -0.02 0.09 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.04 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.01 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 181

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 26

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000341.1 CTCF ENCSR680WMF middle frontal area 46 Homo sapiens MA0139.2
BP000342.1 CTCF ENCSR684PGO uterus Homo sapiens MA0139.2
BP000343.1 CTCF ENCSR687APM body of pancreas Homo sapiens MA0139.2
BP000344.1 CTCF ENCSR689LFJ middle frontal area 46 Homo sapiens MA0139.2
BP000345.1 CTCF ENCSR689VEF tibial nerve Homo sapiens MA0139.2
BP000346.1 CTCF ENCSR692ILH spleen Homo sapiens MA0139.2
BP000347.1 CTCF ENCSR697YIN breast epithelium Homo sapiens MA0139.2
BP000348.1 CTCF ENCSR699BEK tibial artery Homo sapiens MA0139.2
BP000349.1 CTCF ENCSR699BRV middle frontal area 46 Homo sapiens MA0139.2
BP000350.1 CTCF ENCSR705DNM middle frontal area 46 Homo sapiens MA0139.2
Showing 10 profiles of page 35 from 45 pages