Detailed information of deep learning profile BP000349.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000349.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR699BRV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3927 5173 6321 4827 3893 4419 3915 4179 4712 4830 4862 5037 4330 3087 4513 5155 2318 1333 11547 1762 3370 15145 401 7322 1536 425 632 3305 7482 1846 3008 6697 3506 5561 4313 4908 4381 4310 5053 5890 4223 5013 5155 5508 5190 5130 5073 5094 5046 4816 ]
C [ 5179 5911 4374 4255 3870 5025 7391 6645 5992 5409 5295 4866 5317 6622 4468 2622 14215 17797 1376 10238 7222 709 130 274 1015 189 1156 13868 1351 9850 6434 4783 4281 4006 3721 5294 6371 7192 6158 4362 5414 4772 4731 4706 4710 4897 5081 5088 5048 5100 ]
G [ 6258 4161 4903 4969 4745 4797 3621 3990 4646 5032 4815 4373 5101 3446 6282 8534 1828 427 3892 7090 1995 2373 19142 12043 11225 18976 16489 973 9858 5908 2455 5940 5144 4519 8143 5495 5137 3449 3667 5323 5545 5517 5385 4744 4786 5405 5453 5268 5309 5376 ]
T [ 4553 4672 4319 5866 7409 5676 4990 5103 4567 4646 4945 5641 5169 6762 4654 3606 1556 360 3102 827 7330 1690 244 278 6141 327 1640 1771 1226 2313 8020 2497 6986 5831 3740 4220 4028 4966 5039 4342 4735 4615 4646 4959 5231 4485 4310 4467 4514 4625 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.09 -0.04 0.06 -0.07 -0.05 -0.05 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.19 -0.01 0.13 0.06 0.01 -0.02 -0.07 0.01 -0.03 -0.02 0.15 -0.02 0.08 0.06 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.04 0.20 0.15 0.11 0.19 0.15 -0.02 0.15 0.06 -0.00 0.04 0.03 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.02 -0.05 0.07 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2627

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 875

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages