Detailed information of deep learning profile BP000342.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000342.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR684PGO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4614 4129 3920 5601 7351 5218 3981 4725 3875 4413 4959 5439 5448 5565 4839 2975 4517 5739 2053 646 13577 1231 3311 17245 265 8093 1399 393 652 3472 8056 2176 3120 7314 3713 6085 4518 5221 4869 4370 5300 6624 4394 5302 5576 6099 5530 5233 5361 5349 ]
C [ 5050 3785 5305 6562 4436 4144 3519 5179 8546 7172 6623 5799 5434 4727 5355 6912 4352 2361 16151 19937 912 11983 7992 702 106 213 998 230 1113 14699 1408 10357 6835 5164 4386 4144 3872 5758 6847 8015 6742 4399 5874 4931 4796 4657 4869 5122 5354 5367 ]
G [ 5363 7254 7048 3988 4973 5045 4658 4821 3368 3831 4661 4866 4743 4282 5232 3218 7184 9102 1427 264 3684 7196 1868 1919 20500 12478 11701 20083 17485 947 10356 6252 2446 6145 5625 4612 8732 5702 5145 3350 3606 5748 5588 5692 5373 4803 4829 5908 5548 5532 ]
T [ 5994 5853 4748 4870 4261 6614 8863 6296 5232 5605 4778 4917 5396 6447 5595 7916 4968 3819 1390 174 2848 611 7850 1155 150 237 6923 315 1771 1903 1201 2236 8620 2398 7297 6180 3899 4340 4160 5286 5373 4250 5165 5096 5276 5462 5793 4758 4758 4773 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.09 0.14 -0.02 0.09 0.04 -0.00 -0.01 -0.05 0.00 -0.03 -0.03 0.09 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.14 0.10 0.07 0.13 0.10 -0.02 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.01 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.04 -0.03 -0.03 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 607

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 125

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages