Detailed information of deep learning profile BP000343.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000343.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR687APM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4658 4502 4682 5665 5374 5083 4943 5089 4159 5216 5217 3970 4238 3735 6094 7191 2149 8590 1956 1043 1795 1616 264 7330 156 120 1045 7719 578 2542 181 1357 3676 4845 7880 5516 6241 5211 4766 4602 5514 5143 6192 8878 6659 4093 4870 4676 5692 5995 ]
C [ 5191 5169 5323 4451 4309 5036 5319 5189 5160 3064 2910 4833 5168 8335 4224 5154 5700 2019 5881 9529 667 17163 19163 10641 11671 19456 1553 1553 6951 2863 219 1368 8462 6650 3022 4817 3881 4321 4587 4311 3383 3138 4363 4237 4587 4664 3507 6539 6866 4825 ]
G [ 4918 4919 4764 4488 4289 4328 4504 5357 3967 6357 7599 6483 5394 3493 3570 3991 4736 6510 10069 1000 14628 711 174 838 214 109 602 7537 11155 961 19051 15286 2126 3997 6234 4937 4495 5089 5553 6141 6870 7939 4739 3155 3633 3940 6026 4923 3412 4582 ]
T [ 5174 5351 5172 5337 5969 5494 5175 4306 6655 5304 4215 4655 5141 4378 6053 3605 7356 2822 2035 8369 2851 451 340 1132 7900 256 16741 3132 1257 13575 490 1930 5677 4449 2805 4671 5324 5320 5035 4887 4174 3721 4647 3671 5062 7244 5538 3803 3971 4539 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.12 0.15 0.09 0.12 0.16 0.02 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.03 0.00 -0.06 -0.01 -0.00 0.05 0.10 -0.02 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.01 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 736

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages