Detailed information of deep learning profile BP000344.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000344.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR689LFJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4548 4048 3938 5437 6895 4951 3891 4605 3916 4275 4864 4998 5172 5305 4542 3027 4544 5442 2121 666 13157 1469 3429 16215 371 7892 1273 328 520 3003 8173 1904 2897 7244 3503 5918 4484 5048 4661 4338 5277 6438 4311 5128 5408 5781 5328 5207 5229 5155 ]
C [ 4808 3848 5139 6136 4279 4045 3539 5034 7811 6875 6173 5582 5245 4626 5135 6494 4290 2364 15000 19126 1118 10925 7254 706 114 208 1068 125 960 14712 1071 10234 6666 4772 4245 3837 3603 5434 6588 7721 6441 4180 5530 4800 4668 4574 4764 4831 5156 5119 ]
G [ 5126 6672 6521 3888 4806 4846 4595 4690 3476 3841 4547 4846 4683 4242 5301 3199 6640 8750 1617 268 3231 7124 1793 1937 19608 11970 11117 19574 17094 778 9906 5965 2220 5932 5313 4328 8443 5512 5007 3120 3361 5431 5500 5481 5221 4580 4652 5544 5393 5317 ]
T [ 5797 5711 4681 4818 4299 6437 8254 5950 5076 5288 4695 4853 5179 6106 5301 7559 4805 3723 1541 219 2773 761 7803 1421 186 209 6821 252 1705 1786 1129 2176 8496 2331 7218 6196 3749 4285 4023 5100 5200 4230 4938 4870 4982 5344 5535 4697 4501 4688 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.09 -0.04 0.06 -0.06 -0.04 -0.05 -0.01 0.03 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 0.01 ]
C [ 0.02 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.18 -0.01 0.13 0.07 0.02 -0.00 -0.04 0.03 -0.03 -0.02 0.15 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.05 0.07 -0.02 -0.01 0.10 0.07 -0.01 0.04 0.18 0.14 0.11 0.18 0.14 -0.02 0.14 0.06 0.00 0.03 0.03 0.00 0.04 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.07 -0.03 -0.04 -0.08 0.03 -0.04 0.02 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1277

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 349

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 268

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 122

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages