Detailed information of deep learning profile BP000346.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000346.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR692ILH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.07 0.10 0.03 0.05 0.11 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3811 3739 3804 4967 4516 4279 4209 4262 3382 4483 4290 3297 3528 3108 5077 6023 1831 7057 1684 877 1616 1442 303 6327 162 114 775 6492 448 1995 90 912 2997 4035 7302 4652 5517 4375 3876 3706 4655 4287 5423 8281 5775 3213 3978 3763 5116 5061 ]
C [ 4692 4755 5130 3989 3817 4427 4799 4757 4835 2517 2355 3983 4775 7631 3849 4831 5022 1989 5539 8428 836 14737 16726 9868 10465 17187 1261 1131 5674 2471 78 934 7950 6471 2363 4611 3493 3889 3974 3780 2973 2608 4018 3851 4314 4298 2903 6442 6549 4527 ]
G [ 4630 4522 4225 3948 3843 4146 4138 5084 3325 6007 7387 6151 5057 3073 3293 3630 4277 6129 8533 1020 12744 862 247 561 172 81 448 7254 10705 602 17103 14201 1700 3509 5713 4244 3851 4657 5203 5799 6496 7826 4194 2510 3214 3513 5912 4583 2820 4334 ]
T [ 4454 4571 4428 4683 5411 4735 4441 3484 6045 4580 3555 4156 4227 3775 5368 3103 6457 2412 1831 7262 2391 546 311 831 6788 205 15103 2710 760 12519 316 1540 4940 3572 2209 4080 4726 4666 4534 4302 3463 2866 3952 2945 4284 6563 4794 2799 3102 3665 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.01 0.01 -0.03 0.02 -0.05 -0.03 -0.03 0.04 -0.03 -0.01 -0.05 -0.02 -0.01 0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.01 0.03 0.07 -0.02 0.08 0.11 0.07 0.09 0.11 0.02 -0.01 0.04 0.05 -0.02 -0.01 0.04 0.02 -0.00 0.01 0.00 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.01 0.01 0.02 0.04 -0.01 0.08 -0.02 -0.02 -0.00 -0.04 -0.01 0.00 0.04 0.08 -0.02 0.12 0.08 -0.01 0.02 0.04 0.01 0.01 0.01 0.02 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.03 -0.03 -0.04 0.03 -0.03 0.06 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.01 -0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages