Detailed information of deep learning profile BP000348.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000348.1
Cell line/tissue: tibial artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR699BEK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.08 -0.00 0.02 0.01 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3954 3565 3235 4991 6446 4467 3323 4157 3278 3743 4348 4652 4756 4736 4204 2525 3960 4988 1741 439 12365 1016 2926 14722 230 7000 1111 280 567 2759 7220 1950 2646 6447 3186 5306 3916 4546 4239 3768 4725 5903 3821 4477 4821 5206 4787 4644 4736 4745 ]
C [ 4176 3069 4438 5518 3594 3358 2814 4233 7260 6113 5537 4895 4444 3890 4317 5619 3612 1928 13759 17025 856 10169 6731 473 95 164 778 93 911 12501 1137 8454 5674 4119 3550 3304 3085 4764 5770 6767 5533 3476 4889 4006 3947 3813 3995 4103 4371 4336 ]
G [ 4409 6043 5949 3066 4064 4193 3717 3888 2612 3029 3755 3965 3835 3488 4293 2579 5912 7502 1121 136 2156 6020 1336 1552 17282 10383 9764 17175 14780 828 8317 5444 2013 5123 4735 3842 7422 4675 4209 2583 2798 4674 4554 4843 4529 3949 3943 4850 4633 4645 ]
T [ 5193 5055 4110 4157 3628 5714 7878 5454 4582 4847 4092 4220 4697 5618 4918 7009 4248 3314 1111 132 2355 527 6739 985 125 185 6079 184 1474 1644 1058 1884 7399 2043 6261 5280 3309 3747 3514 4614 4676 3679 4468 4406 4435 4764 5007 4135 3992 4006 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.02 -0.01 0.03 -0.01 -0.03 0.04 -0.03 -0.01 0.09 -0.04 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.01 -0.01 0.03 -0.01 0.01 0.00 0.00 ]
C [ 0.00 0.02 0.04 0.03 -0.02 0.11 0.18 -0.02 0.11 0.06 0.00 -0.01 -0.06 0.00 -0.03 -0.03 0.11 -0.02 0.05 0.04 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.02 0.08 0.06 -0.02 0.03 0.17 0.12 0.09 0.15 0.11 -0.03 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.02 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2987

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages