Detailed information of deep learning profile BP000448.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000448.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR998NQG
Model: BPNet
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Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.12 0.03 0.05 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 4297 4292 4360 5580 5210 4896 4748 4885 3824 5147 4896 3765 3987 3436 5717 6928 2020 8094 1749 980 1759 1661 307 7288 188 97 899 7377 505 2191 112 1089 3445 4494 8200 5292 6271 4994 4414 4262 5314 4901 6174 9275 6572 3663 4549 4224 5819 5734 ]
C [ 5369 5417 5769 4546 4395 5052 5526 5386 5499 2871 2714 4540 5429 8672 4344 5514 5765 2226 6240 9528 878 16612 19008 10849 11681 19491 1494 1375 6343 2988 102 1099 8990 7346 2653 5088 3933 4342 4620 4372 3404 2835 4492 4271 4795 4822 3321 7388 7251 5097 ]
G [ 5204 5092 4859 4594 4297 4612 4725 5819 3868 6863 8444 7052 5661 3546 3879 4085 4873 6921 9936 1238 14573 991 274 752 153 77 554 8185 12139 766 19350 15958 1880 4032 6536 4931 4435 5284 5800 6568 7401 8796 4798 3025 3652 4064 6697 5038 3303 4985 ]
T [ 5052 5121 4934 5202 6020 5362 4923 3832 6731 5041 3868 4565 4845 4268 5982 3395 7264 2681 1997 8176 2712 658 333 1033 7900 257 16975 2985 935 13977 358 1776 5607 4050 2533 4611 5283 5302 5088 4720 3803 3390 4458 3351 4903 7373 5355 3272 3549 4106 ]

Hypothetical CWM

A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.01 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.04 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.09 0.12 0.07 0.10 0.13 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.04 -0.02 0.09 -0.03 -0.03 0.00 -0.06 -0.01 -0.01 0.04 0.08 -0.03 0.13 0.09 -0.01 0.02 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.03 -0.03 -0.04 0.04 -0.04 0.07 -0.02 -0.03 0.03 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 181

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 26

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages