Detailed information of deep learning profile BP000350.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000350.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR705DNM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4255 3733 3583 5121 6740 4726 3625 4362 3551 3926 4684 4775 4931 5045 4377 2775 4141 5349 1915 537 12730 1197 3123 15489 299 7696 1076 365 541 2867 7806 1889 2684 6954 3447 5717 4226 4854 4420 4100 4960 6176 3978 4873 5193 5546 5168 4914 5017 4954 ]
C [ 4459 3420 4715 5773 3817 3618 3076 4606 7563 6567 5793 5179 4912 4171 4651 5996 3922 2054 14354 18038 945 10725 6849 573 110 176 759 156 915 13597 1103 9415 6217 4491 3845 3399 3306 5127 6122 7249 6014 3842 5157 4367 4289 4167 4275 4466 4731 4708 ]
G [ 4669 6346 6213 3478 4333 4431 4121 4229 2958 3360 4140 4451 4235 3800 4764 2905 6358 8068 1325 208 2768 6397 1441 1704 18397 10890 10507 18135 15864 789 8946 5564 1966 5382 4896 4084 7959 4956 4580 2726 2975 5041 5020 5029 4749 4192 4283 5140 4915 4946 ]
T [ 5576 5460 4448 4587 4069 6184 8137 5762 4887 5106 4342 4554 4881 5943 5167 7283 4538 3488 1365 176 2516 640 7546 1193 153 197 6617 303 1639 1706 1104 2091 8092 2132 6771 5759 3468 4022 3837 4884 5010 3900 4804 4690 4728 5054 5233 4439 4296 4351 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.04 0.06 -0.07 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.06 0.04 -0.01 0.12 0.18 -0.02 0.12 0.06 0.01 -0.02 -0.06 0.01 -0.04 -0.03 0.13 -0.02 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.05 -0.03 -0.02 0.08 0.06 -0.02 0.03 0.18 0.13 0.11 0.17 0.13 -0.02 0.14 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.03 -0.05 0.06 -0.04 -0.05 -0.09 0.03 -0.04 0.01 -0.03 -0.07 -0.02 0.03 -0.05 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 426

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 388

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 214

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 167

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages