Detailed information of deep learning profile BP000345.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000345.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR689VEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4331 4203 4384 5355 5018 4660 4637 4747 3859 4917 4819 3735 4041 3462 5704 6866 2035 8185 1895 1019 1727 1567 253 6590 176 107 1020 7294 613 2486 176 1329 3455 4540 7282 5100 5886 4924 4500 4338 5176 4803 5810 8246 6143 3873 4427 4316 5457 5550 ]
C [ 4920 4962 5187 4234 4089 4746 5103 4929 4943 2913 2720 4595 4855 7963 4035 4890 5405 1864 5472 9046 699 16024 18081 10443 11006 18376 1559 1436 6529 2682 223 1303 8060 6224 2855 4578 3702 4070 4304 4131 3262 2942 4179 4011 4427 4399 3372 6266 6464 4604 ]
G [ 4691 4678 4393 4214 4097 4251 4256 5122 3818 5957 7329 6084 5040 3291 3392 3699 4465 6110 9563 989 13553 721 124 708 140 65 497 7089 10420 959 17897 14202 1993 3847 5893 4730 4185 4854 5228 5764 6432 7510 4481 2979 3519 3742 5805 4687 3206 4415 ]
T [ 4861 4960 4839 5000 5599 5146 4807 4005 6183 5016 3935 4389 4867 4087 5672 3348 6898 2644 1873 7749 2824 491 345 1062 7481 255 15727 2984 1241 12676 507 1969 5295 4192 2773 4395 5030 4955 4771 4570 3933 3548 4333 3567 4714 6789 5199 3534 3676 4234 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.01 0.04 0.12 -0.03 0.11 0.15 0.09 0.12 0.16 0.02 -0.02 0.04 0.07 -0.02 -0.03 0.05 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.04 0.00 -0.06 -0.02 -0.01 0.05 0.10 -0.03 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 541

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages