Detailed information of deep learning profile BP000259.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000259.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR428BKN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 0.02 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 0.02 0.05 0.01 0.13 0.14 0.06 0.10 0.14 0.00 -0.00 0.01 0.01 -0.00 0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.01 0.02 0.02 0.01 0.09 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.03 0.06 0.03 0.17 0.09 -0.01 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.01 0.01 0.08 -0.01 0.01 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 10 18 4 3 4 3 5 15 0 1 4 22 1 6 0 4 7 18 26 14 14 16 11 15 10 10 17 12 18 15 7 5 21 15 3 9 15 16 8 9 10 9 11 13 10 11 13 11 17 6 ]
C [ 13 7 20 26 6 51 45 33 41 44 4 2 19 11 1 4 23 13 5 10 13 11 17 16 17 11 14 16 17 15 2 40 21 7 22 27 14 13 23 26 14 17 25 17 18 20 13 21 16 21 ]
G [ 18 24 22 9 40 2 4 5 0 3 7 24 29 9 52 42 12 13 20 18 18 19 17 15 21 22 12 17 17 7 44 6 6 26 26 11 15 19 19 9 24 17 11 15 21 18 20 18 17 17 ]
T [ 15 7 10 18 6 0 2 3 15 8 41 8 7 30 3 6 14 12 5 14 11 10 11 10 8 13 13 11 4 19 3 5 8 8 5 9 12 8 6 12 8 13 9 11 7 7 10 6 6 12 ]

Hypothetical CWM

   
A [ -0.03 0.03 -0.02 -0.06 -0.03 -0.01 -0.03 0.02 -0.07 -0.04 -0.02 0.04 -0.06 -0.04 -0.08 -0.04 -0.01 0.00 0.02 0.01 0.02 ]
C [ 0.02 -0.01 0.05 0.10 -0.01 0.13 0.16 0.10 0.14 0.16 0.01 -0.01 0.05 0.06 -0.04 -0.02 0.06 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.04 0.05 -0.01 0.10 -0.04 -0.05 -0.02 -0.07 -0.02 0.00 0.07 0.10 -0.00 0.18 0.10 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.03 -0.01 -0.01 0.03 -0.02 -0.05 -0.06 -0.05 0.05 -0.03 0.08 -0.02 -0.02 0.03 -0.03 -0.00 0.02 -0.02 -0.01 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17401

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 384

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000322.1 CTCF ENCSR607XFI HepG2 Homo sapiens MA0139.2
BP000323.1 CTCF ENCSR608WPS transverse colon Homo sapiens MA0139.2
BP000324.1 CTCF ENCSR610UDC middle frontal area 46 Homo sapiens MA0139.2
BP000325.1 CTCF ENCSR611HGB GM23338 Homo sapiens MA0139.2
BP000326.1 CTCF ENCSR611JJS A673 Homo sapiens MA0139.2
BP000327.1 CTCF ENCSR614HHL vagina Homo sapiens MA0139.2
BP000328.1 CTCF ENCSR617IFZ HEK293 Homo sapiens MA0139.2
BP000329.1 CTCF ENCSR618QYE stomach Homo sapiens MA0139.2
BP000330.1 CTCF ENCSR619IUE bipolar neuron Homo sapiens MA0139.2
BP000331.1 CTCF ENCSR619WGF middle frontal area 46 Homo sapiens MA0139.2
Showing 10 profiles of page 33 from 45 pages