Detailed information of deep learning profile BP000322.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000322.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR607XFI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.05 -0.00 0.09 0.14 0.04 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.14 0.06 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4946 5119 4904 4685 4834 5533 5335 4985 5169 5010 4597 5778 5122 4182 4642 4071 6351 7503 2647 8846 2493 1492 2060 2040 410 7387 268 369 2129 7060 1087 4255 490 1914 4018 5307 6983 5391 5984 5265 5040 5074 5261 5350 5832 7306 6332 4762 4930 4874 ]
C [ 5819 5634 5670 5977 5870 5131 5126 5737 5605 5860 5659 3887 3662 5652 5730 8548 4620 5494 6192 2102 6084 10068 943 17926 20377 11093 13716 20335 2850 2484 8348 3188 698 2282 8610 6562 3825 5125 4620 5300 5182 4988 4522 4272 5124 5305 5065 5130 4627 6581 ]
G [ 5490 5156 5361 5398 5195 5158 5172 4851 5196 5664 4698 6457 8008 6791 5489 4311 4366 4700 5282 7268 10676 1526 14874 758 125 775 168 128 663 8077 9776 1813 18855 14376 3090 4644 6917 5908 5307 5696 5805 6220 6923 7424 5483 4404 4736 5051 6168 5480 ]
T [ 5105 5451 5425 5300 5461 5538 5727 5787 5390 4826 6406 5238 4568 4735 5499 4430 6023 3663 7239 3144 2107 8274 3483 636 448 2105 7208 528 15718 3739 2149 12104 1317 2788 5642 4847 3635 4936 5449 5099 5333 5078 4654 4314 4921 4345 5227 6417 5635 4425 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.06 -0.03 -0.01 0.05 -0.04 -0.02 -0.06 -0.03 -0.02 -0.01 0.01 0.01 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.03 0.12 -0.02 0.11 0.14 0.08 0.11 0.15 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.04 0.06 -0.02 0.12 -0.03 -0.04 -0.01 -0.06 -0.03 0.00 0.04 0.09 -0.02 0.15 0.09 -0.02 0.02 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.05 0.04 -0.03 0.07 -0.00 -0.01 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 442

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 32

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages