Detailed information of deep learning profile BP000324.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000324.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR610UDC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4627 4478 4738 5579 5353 4993 4874 5036 4171 5275 5074 3998 4259 3758 6264 7272 2235 8541 2176 1130 1814 1704 197 6912 162 138 1184 7987 673 2633 227 1492 3648 4820 7669 5380 6194 5124 4843 4695 5405 5151 6032 8486 6484 4272 4760 4738 5678 5836 ]
C [ 5110 5217 5303 4430 4389 4902 5334 5238 5226 3056 2849 4775 5231 8263 4103 5028 5570 1998 5844 9425 794 16855 19354 11186 11554 19412 1715 1494 6812 2922 239 1371 8418 6573 3011 5009 3951 4460 4614 4275 3552 3133 4437 4346 4645 4585 3693 6411 6606 4943 ]
G [ 4979 4970 4684 4532 4299 4454 4596 5435 4017 6328 7642 6459 5260 3430 3592 3993 4738 6556 9945 1100 14232 832 70 649 136 61 515 7152 11057 1009 18695 14933 2206 4130 6266 4887 4400 5097 5464 6097 6751 7768 4820 3194 3773 4081 5948 4935 3605 4589 ]
T [ 5177 5228 5168 5352 5852 5544 5089 4184 6479 5234 4328 4661 5143 4442 5934 3600 7350 2798 1928 8238 3053 502 272 1146 8041 282 16479 3260 1351 13329 732 2097 5621 4370 2947 4617 5348 5212 4972 4826 4185 3841 4604 3867 4991 6955 5492 3809 4004 4525 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.02 -0.04 0.03 -0.08 -0.04 -0.04 0.07 -0.05 -0.03 -0.07 -0.04 -0.02 -0.00 0.02 0.01 0.02 0.00 0.00 ]
C [ 0.02 0.04 0.00 0.03 0.03 0.00 0.06 0.15 -0.02 0.14 0.18 0.11 0.15 0.19 0.03 -0.01 0.06 0.09 -0.01 -0.02 0.07 0.05 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.02 0.02 0.04 0.05 0.07 -0.01 0.15 -0.02 -0.03 0.02 -0.05 -0.01 0.02 0.06 0.13 -0.01 0.19 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.06 -0.05 -0.06 0.06 -0.04 0.09 -0.02 -0.03 0.04 -0.03 -0.00 0.02 -0.02 -0.02 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 787

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 516

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 414

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 228

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages