Detailed information of deep learning profile BP000323.1

  1. Home
  2. Deep Learning Profile > BP000323.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000323.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR608WPS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4953 4371 4152 6062 7816 5482 4176 5122 4158 4598 5391 5543 5644 5677 4940 3254 4920 6006 2127 578 14391 1415 3474 18098 316 8136 1596 528 841 3745 8484 2417 3422 7604 4078 6313 4877 5627 5112 4827 5767 6850 4726 5569 5884 6220 5760 5717 5692 5659 ]
C [ 5119 3892 5517 6684 4501 4294 3621 5219 8792 7624 6613 5984 5631 5101 5746 7202 4626 2505 16918 20981 1043 12071 8310 503 98 205 899 290 1444 14687 1775 10650 6907 5197 4463 4134 4116 5744 6872 7765 6662 4669 5847 5111 4919 4954 5054 5298 5394 5433 ]
G [ 5409 7371 7237 4075 5196 5125 4734 4949 3571 3926 4804 5071 4881 4387 5324 3313 7005 9321 1397 194 3191 7732 1732 2017 21333 13304 11989 20649 17667 1302 10148 6187 2533 6272 5648 4927 8736 5846 5466 3696 3865 5769 5830 5907 5710 5009 5108 5833 5800 5754 ]
T [ 6438 6285 5013 5098 4406 7018 9388 6629 5398 5771 5111 5321 5763 6754 5909 8150 5368 4087 1477 166 3294 701 8403 1301 172 274 7435 452 1967 2185 1512 2665 9057 2846 7730 6545 4190 4702 4469 5631 5625 4631 5516 5332 5406 5736 5997 5071 5033 5073 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.06 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.04 0.03 -0.01 0.11 0.16 -0.03 0.10 0.04 -0.02 -0.03 -0.07 -0.01 -0.04 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.01 0.03 0.05 -0.03 -0.03 0.06 0.04 -0.02 0.01 0.16 0.11 0.09 0.15 0.11 -0.02 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.02 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 308

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages