Detailed information of deep learning profile BP000330.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in bipolar neuron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000330.1
Cell line/tissue: bipolar neuron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR619IUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.05 0.16 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4723 5982 6877 5705 4775 5422 4638 4942 5431 5570 5308 5732 5142 3862 5207 5965 3095 1669 12564 2339 3961 17036 520 7389 2439 335 768 4018 8015 2309 3481 7618 3900 6213 4829 6032 5108 4984 5583 6474 5133 5814 5935 5864 5648 5717 5681 5729 5738 5392 ]
C [ 6145 6825 5599 5275 4862 5910 8262 7555 7011 6414 6513 5936 6631 7853 5468 3458 15715 20091 2223 10645 8880 864 170 216 1113 148 1529 16045 1982 11952 7800 5696 5215 5000 4884 6226 7122 8462 7098 5596 6325 5875 5596 5914 6034 5818 6033 6000 5821 6138 ]
G [ 7390 5295 5709 5854 6020 5760 4798 5261 5660 5909 6042 5314 5978 4359 7178 9693 2622 982 3994 9206 2880 3230 22357 15480 12864 22582 19139 1260 11890 6348 2674 7144 6310 5297 9495 6325 6554 4585 4808 6256 6637 6330 6551 6045 5907 6515 6694 6318 6316 6473 ]
T [ 5128 5284 5201 6552 7729 6294 5688 5628 5284 5493 5523 6404 5635 7312 5533 4270 1954 644 4605 1196 7665 2256 339 301 6970 321 1950 2063 1499 2777 9431 2928 7961 6876 4178 4803 4602 5355 5897 5060 5291 5367 5304 5563 5797 5336 4978 5339 5511 5383 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.04 0.05 -0.06 -0.05 -0.05 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.10 0.16 -0.01 0.10 0.05 -0.01 -0.03 -0.07 -0.01 -0.03 -0.02 0.13 -0.01 0.08 0.05 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.03 0.17 0.13 0.10 0.16 0.13 -0.01 0.13 0.04 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.02 -0.04 -0.07 0.03 -0.03 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 258

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages