Detailed information of deep learning profile BP000328.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000328.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR617IFZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.02 -0.00 0.04 0.06 0.02 0.02 0.07 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.02 -0.00 0.06 0.03 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4624 4436 4581 5659 5305 4908 4889 4956 4296 5400 4977 4014 4202 3891 6167 7115 2528 8039 2383 1350 2011 1807 327 7336 246 159 1408 7751 629 3144 193 1383 3758 4888 8078 5398 6239 5245 4692 4547 5412 5155 6114 8644 6508 4402 4843 4612 5676 5807 ]
C [ 5470 5700 5972 4837 4776 5382 5799 5745 5550 3379 3275 5227 5853 8578 4675 5776 5884 2513 6688 8892 1199 16961 20018 11860 12423 20461 2093 1570 7325 2396 181 1410 8901 7187 3077 5287 4369 4768 4909 4714 3967 3516 4975 4719 5076 5085 3976 6899 7299 5404 ]
G [ 5507 5480 5197 4985 4818 4981 5006 5936 4285 6886 8305 6915 5822 3908 4011 4259 5047 7192 9578 1765 14061 1361 175 565 153 38 470 8249 11700 1162 19931 16059 2474 4344 6691 5489 4932 5575 6004 6627 7163 8239 5182 3623 4227 4439 6503 5507 3950 5036 ]
T [ 5293 5278 5144 5413 5995 5623 5200 4257 6763 5229 4337 4738 5017 4517 6041 3744 7435 3150 2245 8887 3623 765 374 1133 8072 236 16923 3324 1240 14192 589 2042 5761 4475 3048 4720 5354 5306 5289 5006 4352 3984 4623 3908 5083 6968 5572 3876 3969 4647 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.02 0.01 -0.00 -0.02 -0.01 0.00 -0.02 0.01 -0.02 -0.02 -0.01 0.02 -0.02 -0.01 -0.03 -0.01 -0.00 -0.00 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.00 0.01 0.01 -0.00 0.02 0.05 -0.01 0.05 0.06 0.04 0.05 0.07 0.01 -0.01 0.02 0.03 -0.01 -0.01 0.02 0.01 -0.00 0.01 0.00 ]
G [ 0.01 0.01 0.00 0.01 0.01 0.02 0.03 -0.01 0.05 -0.01 -0.01 -0.00 -0.02 -0.01 -0.00 0.02 0.04 -0.01 0.07 0.04 -0.01 0.01 0.02 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.01 0.01 -0.01 -0.01 0.01 -0.01 -0.02 -0.02 -0.02 0.02 -0.02 0.03 -0.01 -0.01 0.02 -0.01 -0.00 0.01 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3753

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 408

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages