Detailed information of deep learning profile BP000326.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A673 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000326.1
Cell line/tissue: A673
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR611JJS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.16 0.06 0.09 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4993 4780 4835 5282 5225 4966 5083 5030 4688 5289 5092 4362 4609 4116 6138 7289 3179 8418 2915 1740 2249 1820 582 5859 358 268 1986 7622 1028 4204 433 1642 4138 4894 6957 5358 6237 5351 4973 4824 5364 5199 6106 8005 6279 4617 4993 4730 5746 5863 ]
C [ 5460 5646 5578 5091 5140 5516 5657 5691 5490 4387 4121 5831 5421 7924 4766 5415 6123 2506 5421 10062 1306 16407 19496 11804 14167 20030 2730 2278 7610 2941 461 1970 8426 6229 3581 5209 4572 4883 4956 4773 3989 3821 4816 4843 4864 4907 4280 6652 6829 5313 ]
G [ 5186 5329 5085 5153 5067 4939 5061 5412 4821 6008 6995 6026 5448 4362 4383 4414 4992 6521 10171 2045 13384 1680 304 904 222 146 710 7421 10241 1765 18992 15003 2762 5137 6988 5755 5063 5579 5782 6279 7085 7869 5135 3952 4492 4679 6190 5369 4033 4874 ]
T [ 5302 5186 5443 5415 5509 5520 5140 4808 5942 5257 4733 4722 5463 4539 5654 3823 6647 3496 2434 7094 4002 1034 559 2374 6194 497 15515 3620 2062 12031 1055 2326 5615 4681 3415 4619 5069 5128 5230 5065 4503 4052 4884 4141 5306 6738 5478 4190 4333 4891 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 -0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.13 0.17 0.10 0.14 0.18 0.03 -0.01 0.05 0.06 -0.03 -0.03 0.05 0.03 -0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.04 -0.01 -0.07 -0.03 -0.01 0.05 0.11 -0.01 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.06 0.04 -0.06 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 290

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 196

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 145

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages