Detailed information of deep learning profile BP000327.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in vagina using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000327.1
Cell line/tissue: vagina
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR614HHL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3608 3204 2985 4625 6011 4223 2994 3796 2990 3329 4189 4423 4608 4678 3988 2227 3436 4810 1647 398 12092 837 2632 14722 229 7059 698 226 367 2123 7162 1554 2186 6453 2881 5323 3634 4102 4017 3328 4330 6021 3352 4275 4755 5308 4477 4180 4493 4384 ]
C [ 4170 2978 4458 5536 3582 3139 2571 4138 7160 6241 5649 5063 4457 3553 3986 5345 3401 1683 13358 16478 661 10300 6940 501 59 80 566 39 466 13244 568 8866 5945 4277 3581 3292 2950 5046 6163 7503 6038 3125 4959 4121 4034 3695 3911 4175 4333 4544 ]
G [ 4493 6171 6044 3003 4311 4070 3791 3939 2602 2990 3679 3870 3854 3476 4486 2326 6386 7608 1070 159 2678 5576 1229 1146 16778 9909 9317 16738 14958 440 8822 5440 1757 4937 4619 3509 7531 4678 3766 2074 2272 4736 4682 4688 4095 3692 3810 5001 4725 4513 ]
T [ 4878 4796 3662 3985 3245 5717 7793 5276 4397 4589 3632 3793 4230 5442 4689 7251 3926 3048 1074 114 1718 436 6348 780 83 101 6568 146 1358 1342 597 1289 7261 1482 6068 5025 3034 3323 3203 4244 4509 3267 4156 4065 4265 4454 4951 3793 3598 3708 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.07 -0.03 0.05 -0.05 -0.03 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.09 0.14 -0.02 0.09 0.06 0.02 -0.01 -0.04 0.02 -0.03 -0.03 0.11 -0.02 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.03 0.05 -0.01 -0.01 0.08 0.04 -0.00 0.03 0.14 0.11 0.08 0.14 0.10 -0.02 0.11 0.04 0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.06 -0.03 -0.04 0.04 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 71

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages