Detailed information of deep learning profile BP000325.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000325.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR611HGB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.03 0.00 0.06 0.11 0.05 0.08 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.16 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3871 3755 3716 4131 4278 3972 3926 4001 3609 3790 3999 3625 3637 3428 4450 4949 3148 5417 2779 2087 2201 1846 1217 3760 428 79 909 6238 481 2714 143 693 2793 3433 6012 4222 5013 4322 3830 3506 4028 3474 4747 7264 4893 3050 3665 3438 4443 4799 ]
C [ 3738 3805 3787 3431 3449 3748 3932 3749 3838 3139 2937 3728 3832 5138 3575 3858 4077 2549 3804 5790 1728 9892 12668 9037 10999 15065 1467 895 4930 1541 140 696 5963 4942 1998 3442 2892 3147 3370 3118 2208 1938 3046 3005 3455 3247 2510 5332 5450 3670 ]
G [ 3796 3606 3576 3585 3466 3450 3568 3746 3283 4018 4496 4186 3761 3134 2984 3094 3316 4103 5912 2439 7871 1805 738 832 148 39 262 5853 8824 824 14611 12692 1598 3661 5181 4210 3388 3831 3993 4739 5696 7315 3682 2229 2910 2946 4750 3706 2337 3318 ]
T [ 3943 4182 4269 4201 4155 4178 3922 3852 4618 4401 3916 3809 4118 3648 4339 3447 4807 3279 2853 5032 3548 1805 725 1719 3773 165 12710 2362 1113 10269 454 1267 4994 3312 2157 3474 4055 4048 4155 3985 3416 2621 3873 2850 4090 6105 4423 2872 3118 3561 ]

Hypothetical CWM

   
A [ 0.01 -0.01 0.01 -0.01 -0.03 -0.02 -0.00 -0.03 0.00 -0.05 -0.05 -0.05 0.05 -0.07 -0.02 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.01 -0.02 0.00 -0.00 ]
C [ 0.01 0.01 -0.00 0.02 0.06 -0.01 0.08 0.12 0.08 0.11 0.16 0.02 -0.03 0.04 0.06 -0.02 -0.04 0.04 0.04 -0.01 0.01 0.00 0.00 0.00 0.00 -0.01 -0.03 -0.01 -0.01 0.00 0.00 -0.02 0.02 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.07 -0.02 -0.03 -0.01 -0.07 -0.03 -0.03 0.04 0.10 -0.02 0.16 0.12 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 0.02 0.03 0.05 -0.00 -0.03 -0.01 -0.00 0.02 0.00 ]
T [ -0.01 0.01 -0.01 -0.01 0.01 -0.00 -0.03 -0.05 -0.05 0.01 -0.06 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.01 0.00 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.00 0.02 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1516

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 417

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 279

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages