Detailed information of deep learning profile BP000313.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in lower leg skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000313.1
Cell line/tissue: lower leg skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1929.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR582MTM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

A [ 15 17 29 13 25 24 28 13 19 24 18 19 22 18 30 7 12 17 28 19 13 3 6 24 13 8 57 4 26 33 12 12 24 14 24 24 21 14 27 15 28 21 24 19 19 20 16 26 18 20 ]
C [ 25 34 24 30 31 23 25 25 29 28 26 21 21 29 24 41 68 57 43 8 5 0 5 18 36 84 33 92 67 13 10 15 14 9 26 29 46 58 36 40 35 26 28 35 26 34 32 28 29 33 ]
G [ 47 29 34 35 38 26 39 41 31 28 42 45 42 41 25 30 14 13 12 38 71 83 89 35 35 7 6 7 3 10 64 64 48 47 37 29 18 18 22 21 27 40 27 29 40 30 40 33 37 29 ]
T [ 19 26 19 28 12 33 14 27 27 26 20 21 21 18 27 28 12 19 23 41 17 20 6 29 22 7 10 3 10 50 20 15 20 36 19 24 21 16 21 30 16 19 27 23 21 22 18 19 22 24 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 691

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 322

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 301

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 212

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 212

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 209

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 190

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 186

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 182

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 169

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 166

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 120

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 108

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 57

Motif name: counts.pos_patterns.pattern_24

Num. of seqlets: 39

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 36

Motif name: counts.pos_patterns.pattern_26

Num. of seqlets: 30

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000332.1 CTCF ENCSR647SQF mesothelial cell of epicardium Homo sapiens MA0139.2
BP000333.1 CTCF ENCSR655ECZ vagina Homo sapiens MA0139.2
BP000334.1 CTCF ENCSR661NXJ breast epithelium Homo sapiens MA0139.2
BP000335.1 CTCF ENCSR661XNQ gastroesophageal sphincter Homo sapiens MA0139.2
BP000336.1 CTCF ENCSR666JEF middle frontal area 46 Homo sapiens MA0139.2
BP000337.1 CTCF ENCSR668BTN thoracic aorta Homo sapiens MA0139.2
BP000338.1 CTCF ENCSR671ITY HCT116 Homo sapiens MA0139.2
BP000339.1 CTCF ENCSR673WZL LNCAP Homo sapiens MA0139.2
BP000340.1 CTCF ENCSR676LDQ middle frontal area 46 Homo sapiens MA0139.2
BP000341.1 CTCF ENCSR680WMF middle frontal area 46 Homo sapiens MA0139.2
Showing 10 profiles of page 34 from 45 pages