Detailed information of deep learning profile BP000103.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in epithelial cell of proximal tubule using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000103.1
Cell line/tissue: epithelial cell of proximal tubule
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 ]
C [ -0.00 0.22 0.29 0.11 0.12 0.28 -0.00 -0.00 0.01 0.01 0.00 -0.01 0.04 0.02 -0.00 -0.00 ]
G [ 0.15 0.00 0.00 0.00 0.00 -0.00 -0.00 0.07 0.08 0.01 0.29 0.16 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.03 0.00 0.16 -0.01 0.00 0.05 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4 0 0 11 0 0 4 9 4 4 1 1 5 9 21 12 7 6 6 3 10 8 9 8 6 3 4 11 12 14 6 8 14 4 8 9 6 9 7 7 13 8 9 7 5 8 11 9 6 17 ]
C [ 2 52 53 40 32 51 4 3 22 11 0 6 34 31 11 21 25 32 33 38 35 25 21 24 33 38 38 26 19 19 29 23 19 21 27 27 20 18 15 16 25 15 20 19 21 16 21 21 15 19 ]
G [ 41 1 0 2 3 1 1 37 26 7 51 43 4 9 16 14 13 7 7 6 2 8 14 11 5 7 6 6 7 10 5 11 9 16 10 7 10 15 15 18 6 18 14 15 15 14 9 14 17 9 ]
T [ 6 0 0 0 18 1 44 4 1 31 1 3 10 4 5 6 8 8 7 6 6 12 9 10 9 5 5 10 15 10 13 11 11 12 8 10 17 11 16 12 9 12 10 12 12 15 12 9 15 8 ]

Hypothetical CWM

   
A [ -0.03 0.00 -0.07 0.07 -0.12 -0.07 -0.00 0.11 -0.10 -0.04 -0.15 -0.07 -0.02 -0.00 0.05 0.01 ]
C [ -0.06 0.22 0.29 0.14 0.21 0.28 0.01 -0.06 0.03 0.08 -0.09 -0.08 0.07 0.03 -0.02 0.01 ]
G [ 0.19 -0.09 -0.11 -0.02 -0.15 -0.09 -0.03 0.10 0.17 -0.04 0.29 0.18 -0.03 0.05 0.06 0.01 ]
T [ -0.02 -0.09 -0.11 -0.10 0.08 -0.09 0.17 -0.03 -0.05 0.08 -0.05 -0.02 0.03 -0.02 -0.03 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20821

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 35

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000252.1 CTCF ENCSR402IDP MM.1S Homo sapiens MA0139.2
BP000253.1 CTCF ENCSR408XTO body of pancreas Homo sapiens MA0139.2
BP000254.1 CTCF ENCSR408ZEE adrenal gland Homo sapiens MA0139.2
BP000255.1 CTCF ENCSR414CQB A549 Homo sapiens MA0139.2
BP000256.1 CTCF ENCSR419ANE Peyer's patch Homo sapiens MA0139.2
BP000257.1 CTCF ENCSR423MQG brain Homo sapiens MA0139.2
BP000258.1 CTCF ENCSR423ZUM middle frontal area 46 Homo sapiens MA0139.2
BP000259.1 CTCF ENCSR428BKN gastrocnemius medialis Homo sapiens MA0139.2
BP000260.1 CTCF ENCSR430TEE lower leg skin Homo sapiens MA0139.2
BP000261.1 CTCF ENCSR430YRJ KMS-11 Homo sapiens MA0139.2
Showing 10 profiles of page 26 from 45 pages