Detailed information of deep learning profile BP000260.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in lower leg skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000260.1
Cell line/tissue: lower leg skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR430TEE
Model: BPNet
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Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.00 -0.00 0.02 0.04 -0.00 0.02 0.01 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
G [ -0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.01 0.01 0.04 0.02 -0.00 0.02 0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

A [ 188 153 117 274 361 255 148 200 127 156 232 235 225 267 277 101 183 245 82 24 685 55 119 901 23 330 67 29 86 105 339 101 151 382 150 292 185 221 221 191 249 327 182 238 246 277 230 191 239 239 ]
C [ 353 260 310 477 274 244 195 306 597 524 438 424 375 302 258 451 259 105 927 1074 73 734 646 61 34 85 94 19 87 902 42 592 462 296 327 255 241 397 437 572 432 247 399 319 321 320 320 337 344 343 ]
G [ 315 436 530 199 347 307 305 328 190 218 283 253 308 253 355 146 482 632 69 24 279 312 103 90 1056 669 626 1076 878 42 702 361 143 357 391 323 555 348 291 175 220 387 345 358 334 290 317 383 365 333 ]
T [ 276 283 175 182 150 326 484 298 218 234 179 220 224 310 242 434 208 150 54 10 95 31 264 80 19 48 345 8 81 83 49 78 376 97 264 262 151 166 183 194 231 171 206 217 231 245 265 221 184 217 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 0.00 -0.01 -0.02 0.00 -0.02 -0.02 0.01 -0.01 -0.01 0.02 -0.01 -0.00 -0.02 -0.01 -0.01 -0.02 0.00 -0.00 -0.01 0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.00 -0.00 -0.01 0.01 0.01 -0.01 0.03 0.04 -0.01 0.02 0.01 -0.01 -0.01 -0.00 -0.00 -0.02 -0.01 0.03 -0.01 0.01 0.00 -0.00 0.00 -0.00 -0.00 ]
G [ -0.01 -0.00 -0.00 0.00 -0.01 0.00 0.02 -0.01 -0.02 0.01 -0.00 -0.01 -0.01 0.02 0.01 0.01 0.04 0.02 -0.02 0.02 0.00 -0.01 0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.01 0.01 -0.00 -0.01 -0.01 -0.02 -0.02 -0.02 0.01 -0.01 -0.02 -0.01 0.00 -0.02 -0.01 -0.00 -0.02 -0.01 0.01 -0.01 -0.00 -0.00 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages