Detailed information of deep learning profile BP000254.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000254.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR408ZEE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4433 3857 3599 5486 7270 5001 3604 4613 3599 4107 4895 5036 5297 5307 4612 2778 4280 5565 1865 426 13764 1069 3094 16548 244 8122 981 350 563 3042 8241 2080 2774 7307 3609 6041 4421 5011 4606 4182 5278 6625 4155 5117 5491 5968 5390 5170 5300 5081 ]
C [ 4438 3136 4740 5919 3744 3445 2836 4498 7970 6770 5957 5436 4877 4116 4612 5941 3763 1866 15203 18722 773 11423 7157 485 82 169 567 152 908 13744 1119 9509 6391 4626 3734 3450 3241 5154 6365 7553 6184 3700 5278 4358 4204 4054 4236 4488 4726 4779 ]
G [ 4695 6734 6562 3217 4379 4403 3999 4079 2816 3096 4072 4327 4101 3706 4781 2769 6600 8312 1087 133 2541 6376 1291 1436 18979 10958 10804 18653 16304 837 8971 5784 1953 5294 5033 4027 8102 5083 4498 2630 2809 5078 5022 5096 4722 4055 4209 5195 4989 4959 ]
T [ 5863 5702 4528 4807 4036 6580 8990 6239 5044 5456 4505 4630 5154 6300 5424 7941 4786 3686 1274 148 2351 561 7887 960 124 180 7077 274 1654 1806 1098 2056 8311 2202 7053 5911 3665 4181 3960 5064 5158 4026 4974 4858 5012 5352 5594 4576 4414 4610 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.03 0.03 -0.03 -0.02 0.07 -0.04 0.03 -0.05 -0.04 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.09 0.13 -0.02 0.09 0.04 -0.00 -0.01 -0.05 0.00 -0.03 -0.02 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.13 0.10 0.08 0.13 0.09 -0.02 0.09 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.04 -0.04 -0.04 -0.06 0.01 -0.03 -0.00 -0.02 -0.05 -0.02 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages