Detailed information of deep learning profile BP000252.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MM.1S using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000252.1
Cell line/tissue: MM.1S
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR402IDP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.12 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4725 4490 4561 5077 5135 4721 4814 4870 4380 4956 4968 4097 4201 3895 5730 6846 2933 7985 2825 1613 2140 1915 572 6136 380 243 1689 7252 859 3718 285 1452 3656 4784 6992 5216 5839 5193 4679 4768 5124 4904 5920 8069 6087 4299 4878 4478 5695 5814 ]
C [ 5175 5326 5265 4956 4783 5165 5395 5398 5169 3980 3699 5229 5277 7573 4631 5167 5804 2530 5105 9216 1443 15241 18526 11124 13025 19175 2348 1988 7203 2890 417 1662 8111 6249 3245 4780 4228 4472 4722 4367 3776 3359 4536 4448 4659 4728 3820 6567 6462 4895 ]
G [ 4970 5121 4925 4795 4807 4678 4677 5262 4565 5949 6728 5982 5245 4077 4119 4141 4836 6110 9615 2081 12732 1740 316 831 210 119 661 7402 10160 1484 18479 14784 2586 4536 6554 5441 4774 5337 5596 5909 6779 7829 4792 3581 4148 4294 5984 5081 3701 4732 ]
T [ 5063 4996 5182 5105 5208 5369 5047 4403 5819 5048 4538 4625 5210 4388 5453 3779 6360 3308 2388 7023 3618 1037 519 1842 6318 396 15235 3291 1711 11841 752 2035 5580 4364 3142 4496 5092 4931 4936 4889 4254 3841 4685 3835 5039 6612 5251 3807 4075 4492 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.05 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.09 0.13 0.08 0.10 0.14 0.02 -0.01 0.04 0.05 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.02 -0.03 -0.01 -0.06 -0.03 -0.00 0.04 0.09 -0.02 0.14 0.09 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.02 -0.04 -0.04 -0.05 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 334

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages